Home
Random
Nearby
Log in
Settings
Donate
About Wikidata
Disclaimers
Search
(Q41788842)
Watch
English
Molecular dynamics simulations and free energy calculations of base flipping in dsRNA.
scientific article published on 5 April 2005
In more languages
edit
Statements
instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMC publication ID
1370749
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15811914%20AND%20SRC:MED&resulttype=core&format=json
retrieved
10 January 2020
title
Molecular dynamics simulations and free energy calculations of base flipping in dsRNA
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
1370749
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15811914%20AND%20SRC:MED&resulttype=core&format=json
retrieved
10 January 2020
author
Lennart Nilsson
series ordinal
4
1 reference
stated in
Europe PubMed Central
PMC publication ID
1370749
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15811914%20AND%20SRC:MED&resulttype=core&format=json
retrieved
10 January 2020
Marie Öhman
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMC publication ID
1370749
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15811914%20AND%20SRC:MED&resulttype=core&format=json
retrieved
10 January 2020
author name string
Katarina Hart
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
1370749
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15811914%20AND%20SRC:MED&resulttype=core&format=json
retrieved
10 January 2020
Boel Nyström
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
1370749
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15811914%20AND%20SRC:MED&resulttype=core&format=json
retrieved
10 January 2020
language of work or name
English
0 references
publication date
5 April 2005
1 reference
stated in
Europe PubMed Central
PMC publication ID
1370749
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15811914%20AND%20SRC:MED&resulttype=core&format=json
retrieved
10 January 2020
published in
RNA
1 reference
stated in
Europe PubMed Central
PMC publication ID
1370749
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15811914%20AND%20SRC:MED&resulttype=core&format=json
retrieved
10 January 2020
volume
11
1 reference
stated in
Europe PubMed Central
PMC publication ID
1370749
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15811914%20AND%20SRC:MED&resulttype=core&format=json
retrieved
10 January 2020
issue
5
1 reference
stated in
Europe PubMed Central
PMC publication ID
1370749
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15811914%20AND%20SRC:MED&resulttype=core&format=json
retrieved
10 January 2020
page(s)
609-618
1 reference
stated in
Europe PubMed Central
PMC publication ID
1370749
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15811914%20AND%20SRC:MED&resulttype=core&format=json
retrieved
10 January 2020
cites work
Dynamic opening of DNA during the enzymatic search for a damaged base
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370749
retrieved
6 June 2018
Opening mechanism of G.T/U pairs in DNA and RNA duplexes: a combined study of imino proton exchange and molecular dynamics simulation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370749
retrieved
6 June 2018
Control of human potassium channel inactivation by editing of a small mRNA hairpin
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370749
retrieved
6 June 2018
Caught in the act: visualization of an intermediate in the DNA base-flipping pathway induced by HhaI methyltransferase
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370749
retrieved
6 June 2018
Altered structural fluctuations in duplex RNA versus DNA: a conformational switch involving base pair opening
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370749
retrieved
6 June 2018
ADAR2 A-->I editing: site selectivity and editing efficiency are separate events
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370749
retrieved
6 June 2018
An ADAR that edits transcripts encoding ion channel subunits functions as a dimer.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370749
retrieved
6 June 2018
Requirement of dimerization for RNA editing activity of adenosine deaminases acting on RNA
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370749
retrieved
6 June 2018
Base pair opening within B-DNA: free energy pathways for GC and AT pairs from umbrella sampling simulations
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370749
retrieved
6 June 2018
Protein-facilitated base flipping in DNA by cytosine-5-methyltransferase.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370749
retrieved
6 June 2018
Role of base flipping in specific recognition of damaged DNA by repair enzymes.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370749
retrieved
6 June 2018
Adenosine to inosine editing by ADAR2 requires formation of a ternary complex on the GluR-B R/G site
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370749
retrieved
6 June 2018
RNA editing by adenosine deaminases that act on RNA
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370749
retrieved
6 June 2018
AdoMet-dependent methylation, DNA methyltransferases and base flipping
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370749
retrieved
6 June 2018
Conformational changes that occur during an RNA-editing adenosine deamination reaction
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370749
retrieved
6 June 2018
Imino proton exchange and base-pair kinetics in RNA duplexes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370749
retrieved
6 June 2018
Substrate recognition by ADAR1 and ADAR2
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370749
retrieved
6 June 2018
Analysis of the RNA-editing reaction of ADAR2 with structural and fluorescent analogues of the GluR-B R/G editing site.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370749
retrieved
6 June 2018
Point mutation in an AMPA receptor gene rescues lethality in mice deficient in the RNA-editing enzyme ADAR2
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370749
retrieved
6 June 2018
Regulation of serotonin-2C receptor G-protein coupling by RNA editing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370749
retrieved
6 June 2018
Analysis of Xenopus dsRNA adenosine deaminase cDNAs reveals similarities to DNA methyltransferases
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370749
retrieved
6 June 2018
A nucleotide-flipping mechanism from the structure of human uracil-DNA glycosylase bound to DNA
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370749
retrieved
6 June 2018
HhaI methyltransferase flips its target base out of the DNA helix
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370749
retrieved
6 June 2018
Control of kinetic properties of AMPA receptor channels by nuclear RNA editing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370749
retrieved
6 June 2018
Preferential selection of adenosines for modification by double-stranded RNA adenosine deaminase.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370749
retrieved
6 June 2018
The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370749
retrieved
6 June 2018
Substrate specificity of the dsRNA unwinding/modifying activity
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370749
retrieved
6 June 2018
RNA editing in brain controls a determinant of ion flow in glutamate-gated channels
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370749
retrieved
6 June 2018
Energetic and conformational aspects of A:T base-pair opening within the DNA double helix.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370749
retrieved
18 August 2018
Nucleic acid base pair dynamics: the impact of sequence and structure using free-energy calculations.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370749
retrieved
18 August 2018
The trapping of a spontaneously "flipped-out" base from double helical nucleic acids by host-guest complexation with beta-cyclodextrin: the intrinsic base-flipping rate constant for DNA and RNA.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370749
retrieved
18 August 2018
Base flipping in DNA: pathways and energetics studied with molecular dynamic simulations.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370749
retrieved
18 August 2018
Free energy and structural pathways of base flipping in a DNA GCGC containing sequence.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370749
retrieved
18 August 2018
Sequence dependence of base-pair opening in a DNA dodecamer containing the CACA/GTGT sequence motif
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370749
retrieved
18 August 2018
Polar hydrogen positions in proteins: Empirical energy placement and neutron diffraction comparison
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370749
retrieved
2 December 2018
Double-stranded RNA adenosine deaminases ADAR1 and ADAR2 have overlapping specificities
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/15811914
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Evidence from base-pair kinetics for two types of adenine tract structures in solution: their relation to DNA curvature
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/15811914
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1261/RNA.7147805
1 reference
stated in
Europe PubMed Central
PMC publication ID
1370749
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15811914%20AND%20SRC:MED&resulttype=core&format=json
retrieved
10 January 2020
PMC publication ID
1370749
1 reference
stated in
Europe PubMed Central
PMC publication ID
1370749
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15811914%20AND%20SRC:MED&resulttype=core&format=json
retrieved
10 January 2020
PubMed publication ID
15811914
1 reference
stated in
Europe PubMed Central
PMC publication ID
1370749
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15811914%20AND%20SRC:MED&resulttype=core&format=json
retrieved
10 January 2020
ResearchGate publication ID
7924342
0 references
Sitelinks
Wikipedia
(0 entries)
edit
Wikibooks
(0 entries)
edit
Wikinews
(0 entries)
edit
Wikiquote
(0 entries)
edit
Wikisource
(0 entries)
edit
Wikiversity
(0 entries)
edit
Wikivoyage
(0 entries)
edit
Wiktionary
(0 entries)
edit
Multilingual sites
(0 entries)
edit