(Q41819265)

English

Comparison of interactions of diamine and Mg²⁺ with RNA tertiary structures: similar versus differential effects on the stabilities of diverse RNA folds

scientific article published on 19 August 2013

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

Comparison of interactions of diamine and Mg²⁺ with RNA tertiary structures: similar versus differential effects on the stabilities of diverse RNA folds (English)

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

author name string

Robert J Trachman

1

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

David E Draper

2

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

language of work or name

0 references

publication date

19 August 2013

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

52

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

34

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

5911-5919

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

Evidence for a thermodynamically distinct Mg2+ ion associated with formation of an RNA tertiary structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3809084

6 June 2018

Ion-RNA interactions thermodynamic analysis of the effects of mono- and divalent ions on RNA conformational equilibria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3809084

6 June 2018

Molecular crowding stabilizes folded RNA structure by the excluded volume effect

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3809084

6 June 2018

Dependence of RNA tertiary structural stability on Mg2+ concentration: interpretation of the Hill equation and coefficient

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3809084

6 June 2018

Polyamines are not required for aerobic growth of Escherichia coli: preparation of a strain with deletions in all of the genes for polyamine biosynthesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3809084

6 June 2018

The influence of monovalent cation size on the stability of RNA tertiary structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3809084

6 June 2018

Direct quantitation of Mg2+-RNA interactions by use of a fluorescent dye.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3809084

6 June 2018

Structural insights into amino acid binding and gene control by a lysine riboswitch

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3809084

6 June 2018

Crystal structure of the lysine riboswitch regulatory mRNA element

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3809084

6 June 2018

Global molecular structure and interfaces: refining an RNA:RNA complex structure using solution X-ray scattering data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3809084

6 June 2018

Structure and mechanism of a metal-sensing regulatory RNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3809084

6 June 2018

Metal-ion binding and metal-ion induced folding of the adenine-sensing riboswitch aptamer domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3809084

6 June 2018

Effects of osmolytes on RNA secondary and tertiary structure stabilities and RNA-Mg2+ interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3809084

6 June 2018

Charge density of divalent metal cations determines RNA stability

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3809084

6 June 2018

Mg2+-RNA interaction free energies and their relationship to the folding of RNA tertiary structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3809084

6 June 2018

Folding of the adenine riboswitch

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3809084

6 June 2018

Optimization of a ribosomal structural domain by natural selection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3809084

6 June 2018

Determining the Mg2+ stoichiometry for folding an RNA metal ion core

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3809084

6 June 2018

Ions and RNA folding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3809084

6 June 2018

Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3809084

6 June 2018

Structure of a natural guanine-responsive riboswitch complexed with the metabolite hypoxanthine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3809084

6 June 2018

Fluorescence measurements of free [Mg2+] by use of mag-fura 2 in Salmonella enterica

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3809084

6 June 2018

A compact RNA tertiary structure contains a buried backbone-K+ complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3809084

6 June 2018

A thermodynamic framework for Mg2+ binding to RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3809084

6 June 2018

TectoRNA: modular assembly units for the construction of RNA nano-objects

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3809084

6 June 2018

Crystal structure of a conserved ribosomal protein-RNA complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3809084

6 June 2018

Compensating effects of opposing changes in putrescine (2+) and K+ concentrations on lac repressor-lac operator binding: in vitro thermodynamic analysis and in vivo relevance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3809084

6 June 2018

Bases defining an ammonium and magnesium ion-dependent tertiary structure within the large subunit ribosomal RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3809084

6 June 2018

Productive phage infection in Escherichia coli with reduced internal levels of the major cations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3809084

6 June 2018

Manipulation of intracellular magnesium content in polymyxin B nonapeptide-sensitized Escherichia coli by ionophore A23187.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3809084

6 June 2018

Methods for measurement of intracellular magnesium: NMR and fluorescence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3809084

6 June 2018

1,4-Diaminobutane (putrescine), spermidine, and spermine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3809084

6 June 2018

An RNA sensor for intracellular Mg(2+).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3809084

18 August 2018

RNA helical packing in solution: NMR structure of a 30 kDa GAAA tetraloop-receptor complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3809084

18 August 2018

(Z)-1,4-diamino-2-butene as a vector of boron, fluorine, or iodine for cancer therapy and imaging: synthesis and biological evaluation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3809084

18 August 2018

Stabilization of RNA tertiary structure by monovalent cations

1 reference

https://pubmed.ncbi.nlm.nih.gov/23899366

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A magnesium ion core at the heart of a ribozyme domain

1 reference

https://pubmed.ncbi.nlm.nih.gov/23899366

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Equilibrium dialysis studies of polyamine binding to DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/23899366

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Affinities and selectivities of divalent cation binding sites within an RNA tertiary structure

1 reference

https://pubmed.ncbi.nlm.nih.gov/23899366

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A specific monovalent metal ion integral to the AA platform of the RNA tetraloop receptor

1 reference

https://pubmed.ncbi.nlm.nih.gov/23899366

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Interactions of some naturally occurring cations with phenylalanine and initiator tRNA from yeast as reflected by their thermal stability

1 reference

https://pubmed.ncbi.nlm.nih.gov/23899366

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Rapid mutagenesis and purification of phage RNA polymerases

1 reference

https://pubmed.ncbi.nlm.nih.gov/23899366

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1021/BI400529Q

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

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