(Q41843564)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23629520%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

title

Batch effects and pathway analysis: two potential perils in cancer studies involving DNA methylation array analysis (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23629520%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

0 references

1 reference

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23629520%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

author name string

Kristin N Harper

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23629520%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Mary V Gamble

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23629520%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

publication date

29 April 2013

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23629520%20AND%20SRC:MED&resulttype=core&format=json

Cancer Epidemiology, Biomarkers & Prevention

29 February 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23629520%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

volume

22

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23629520%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

issue

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23629520%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

page(s)

1052-1060

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23629520%20AND%20SRC:MED&resulttype=core&format=json

Epigenome-wide association data implicate DNA methylation as an intermediary of genetic risk in rheumatoid arthritis

29 February 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3687782

OSAT: a tool for sample-to-batch allocations in genomics experiments

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3687782

Comparison of different normalization assumptions for analyses of DNA methylation data from the cancer genome

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3687782

Methylation markers of early-stage non-small cell lung cancer

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3687782

DNA methylation arrays as surrogate measures of cell mixture distribution

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3687782

Batch effect correction for genome-wide methylation data with Illumina Infinium platform

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3687782

Epigenetic impact of long-term shiftwork: pilot evidence from circadian genes and whole-genome methylation analysis

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3687782

Evidence for widespread changes in promoter methylation profile in human placenta in response to increasing gestational age and environmental/stochastic factors

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3687782

Increased methylation variation in epigenetic domains across cancer types

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3687782

Tobacco-smoking-related differential DNA methylation: 27K discovery and replication

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3687782

DNA methylation array analysis identifies profiles of blood-derived DNA methylation associated with bladder cancer.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3687782

Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3687782

Tackling the widespread and critical impact of batch effects in high-throughput data

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3687782

Tissue-specific dysregulation of DNA methylation in aging

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3687782

Age-dependent DNA methylation of genes that are suppressed in stem cells is a hallmark of cancer.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3687782

Cytosine methylation dysregulation in neonates following intrauterine growth restriction

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3687782

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3687782

In vitro analysis of integrated global high-resolution DNA methylation profiling with genomic imbalance and gene expression in osteosarcoma

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3687782

An integrated genomic-based approach to individualized treatment of patients with advanced-stage ovarian cancer.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3687782

Common genetic variants account for differences in gene expression among ethnic groups

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3687782

Adjusting batch effects in microarray expression data using empirical Bayes methods

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3687782

Genome-wide methylation analysis identifies involvement of TNF-α mediated cancer pathways in prostate cancer

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3687782

Sequence overlap between autosomal and sex-linked probes on the Illumina HumanMethylation27 microarray.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3687782

Distinct physiological states of Plasmodium falciparum in malaria-infected patients

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3687782

On the design and analysis of gene expression studies in human populations

18 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23629520

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Run batch effects potentially compromise the usefulness of genomic signatures for ovarian cancer

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23629520

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1158/1055-9965.EPI-13-0114

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23629520%20AND%20SRC:MED&resulttype=core&format=json

release_irc4cfyux5bsxee4wak2yvnx74

29 February 2020

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/irc4cfyux5bsxee4wak2yvnx74

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23629520%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

PubMed publication ID

23629520

1 reference