(Q41865363)

13 October 2017

Structural insight into RNA hairpin folding intermediates (English)

1 reference

13 October 2017

2

1 reference

13 October 2017

5

Gunnar Carlsson

1 reference

13 October 2017

Gregory R Bowman

1

1 reference

13 October 2017

Yuan Yao

3

1 reference

13 October 2017

Jian Sun

4

1 reference

13 October 2017

Leonidas J Guibas

6

1 reference

13 October 2017

Vijay S Pande

7

1 reference

13 October 2017

language of work or name

English

0 references

publication date

1 July 2008

1 reference

Journal of the American Chemical Society

13 October 2017

1 reference

13 October 2017

130

1 reference

13 October 2017

30

1 reference

13 October 2017

9676-9678

1 reference

Convergence of folding free energy landscapes via application of enhanced sampling methods in a distributed computing environment

13 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652247

Folding of a DNA hairpin loop structure in explicit solvent using replica-exchange molecular dynamics simulations

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652247

A riboswitch selective for the queuosine precursor preQ1 contains an unusually small aptamer domain

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652247

5 June 2018

Serial replica exchange

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652247

DNA folding and melting observed in real time redefine the energy landscape

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652247

Is hairpin formation in single-stranded polynucleotide diffusion-controlled?

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652247

The initial step of DNA hairpin folding: a kinetic analysis using fluorescence correlation spectroscopy

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652247

Does water play a structural role in the folding of small nucleic acids?

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652247

RNA hairpin-folding kinetics

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652247

Configurational diffusion down a folding funnel describes the dynamics of DNA hairpins

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652247

Dynamics of the RNA hairpin GNRA tetraloop

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652247

New Monte Carlo algorithms for protein folding.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652247

A network of heterogeneous hydrogen bonds in GNRA tetraloops

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652247

Exceptionally stable nucleic acid hairpins

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652247

Bent helix formation between RNA hairpins with complementary loops

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652247

Architecture of ribosomal RNA: constraints on the sequence of "tetra-loops"

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652247

Tetraloops and RNA folding

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652247

Ribosomal RNA identity elements for ricin A-chain recognition and catalysis. Analysis with tetraloop mutants

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652247

Absence of reptation in the high-temperature folding of the trpzip2 beta-hairpin peptide

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652247

Model for an RNA tertiary interaction from the structure of an intermolecular complex between a GAAA tetraloop and an RNA helix.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652247

A three-state mechanism for DNA hairpin folding characterized by multiparameter fluorescence fluctuation spectroscopy

18 August 2018

1 reference

12 December 2020

Exploring the energy landscape of a small RNA hairpin

1 reference

12 December 2020

Direct revelation of multiple conformations in RNA by femtosecond dynamics

1 reference

12 December 2020

Simulation of the pressure and temperature folding/unfolding equilibrium of a small RNA hairpin

1 reference

12 December 2020

Identifiers

DOI

10.1021/JA8032857

1 reference

13 October 2017

1 reference

13 October 2017

PubMed publication ID

18593120

1 reference