(Q41887560)

13 October 2017

Evaluation of normalization methods to pave the way towards large-scale LC-MS-based metabolomics profiling experiments (English)

1 reference

13 October 2017

1 reference

Manu Vanaerschot

4

0 references

Geert Baggerman

object named as

Geert Baggerman

3

0 references

Tomasz Burzykowski

object named as

Tomasz Burzykowski

7

0 references

author name string

Bedilu Alamirie Ejigu

1

1 reference

13 October 2017

Dirk Valkenborg

2

1 reference

13 October 2017

Erwin Witters

5

1 reference

13 October 2017

Jean-Claude Dujardin

6

1 reference

13 October 2017

Maya Berg

8

1 reference

13 October 2017

29 June 2013

1 reference

OMICS A Journal of Integrative Biology

13 October 2017

1 reference

13 October 2017

17

1 reference

13 October 2017

9

1 reference

13 October 2017

473-485

1 reference

LC-MS metabolomics from study design to data-analysis - using a versatile pathogen as a test case

13 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760460

A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760460

State-of-the art data normalization methods improve NMR-based metabolomic analysis

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760460

Separating the wheat from the chaff: a prioritisation pipeline for the analysis of metabolomics datasets

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760460

PeakML/mzMatch: a file format, Java library, R library, and tool-chain for mass spectrometry data analysis

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760460

Metabolomics to unveil and understand phenotypic diversity between pathogen populations

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760460

Simple data-reduction method for high-resolution LC-MS data in metabolomics

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760460

Towards an unbiased metabolic profiling of protozoan parasites: optimisation of a Leishmania sampling protocol for HILIC-orbitrap analysis

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760460

Comparison of normalization methods for Illumina BeadChip HumanHT-12 v3.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760460

Compensation for systematic cross-contribution improves normalization of mass spectrometry based metabolomics data

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760460

Data-driven normalization strategies for high-throughput quantitative RT-PCR.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760460

Bias, randomization, and ovarian proteomic data: a reply to "producers and consumers".

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760460

A strategy for the prior processing of high-resolution mass spectral data obtained from high-dimensional combined fractional diagonal chromatography

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760460

Highly sensitive feature detection for high resolution LC/MS

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760460

A statistical model for iTRAQ data analysis

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760460

Capturing heterogeneity in gene expression studies by surrogate variable analysis

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760460

LIPID MAPS online tools for lipid research

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760460

Normalization method for metabolomics data using optimal selection of multiple internal standards

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760460

Chromatographic alignment of ESI-LC-MS proteomics data sets by ordered bijective interpolated warping.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760460

Centering, scaling, and transformations: improving the biological information content of metabolomics data

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760460

Adjusting batch effects in microarray expression data using empirical Bayes methods

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760460

Large-scale human metabolomics studies: a strategy for data (pre-) processing and validation

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760460

Statistical tests for differential expression in cDNA microarray experiments

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760460

Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760460

Normalizing DNA microarray data

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760460

Evaluation of normalization procedures for oligonucleotide array data based on spiked cRNA controls

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760460

Analytical error reduction using single point calibration for accurate and precise metabolomic phenotyping.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760460

Quantification of proteins and metabolites by mass spectrometry without isotopic labeling or spiked standards

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760460

Contrast normalization of oligonucleotide arrays.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760460

Procedures for large-scale metabolic profiling of serum and plasma using gas chromatography and liquid chromatography coupled to mass spectrometry

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760460

Design of experiments: an efficient strategy to identify factors influencing extraction and derivatization of Arabidopsis thaliana samples in metabolomic studies with gas chromatography/mass spectrometry

2 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23808607

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Using Linear Mixed Models for Normalization of cDNA Microarrays

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23808607

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1089/OMI.2013.0010

1 reference

13 October 2017

1 reference

13 October 2017

PubMed publication ID

23808607

1 reference