(Q41890790)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24475069%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

title

A new exhaustive method and strategy for finding motifs in ChIP-enriched regions (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24475069%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24475069%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

Hui Lu

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24475069%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

author name string

Caiyan Jia

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24475069%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

Yang Wang

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24475069%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

Youfang Lin

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24475069%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

language of work or name

English

0 references

publication date

24 January 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24475069%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24475069%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

volume

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24475069%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24475069%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

page(s)

e86044

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24475069%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

6 March 2020

copyright license

start time

24 January 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Breast cancer risk-associated SNPs modulate the affinity of chromatin for FOXA1 and alter gene expression

5 June 2018

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High resolution genome wide binding event finding and motif discovery reveals transcription factor spatial binding constraints

5 June 2018

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Towards a theoretical understanding of false positives in DNA motif finding

5 June 2018

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Motif discovery and transcription factor binding sites before and after the next-generation sequencing era.

5 June 2018

1 reference

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A highly efficient and effective motif discovery method for ChIP-seq/ChIP-chip data using positional information

5 June 2018

1 reference

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RSAT peak-motifs: motif analysis in full-size ChIP-seq datasets

5 June 2018

1 reference

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Comprehensive genome-wide protein-DNA interactions detected at single-nucleotide resolution

5 June 2018

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5 June 2018

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STEME: efficient EM to find motifs in large data sets

5 June 2018

1 reference

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Quantitative analysis demonstrates most transcription factors require only simple models of specificity

5 June 2018

1 reference

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DREME: motif discovery in transcription factor ChIP-seq data

5 June 2018

1 reference

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5 June 2018

1 reference

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RecMotif: a novel fast algorithm for weak motif discovery

5 June 2018

1 reference

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GimmeMotifs: a de novo motif prediction pipeline for ChIP-sequencing experiments

5 June 2018

1 reference

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Efficient motif finding algorithms for large-alphabet inputs

5 June 2018

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Deep and wide digging for binding motifs in ChIP-Seq data.

5 June 2018

1 reference

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Evaluation of algorithm performance in ChIP-seq peak detection

5 June 2018

1 reference

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De novo motif identification improves the accuracy of predicting transcription factor binding sites in ChIP-Seq data analysis.

5 June 2018

1 reference

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On the detection and refinement of transcription factor binding sites using ChIP-Seq data

5 June 2018

1 reference

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iTriplet, a rule-based nucleic acid sequence motif finder

5 June 2018

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Exhaustive search for over-represented DNA sequence motifs with CisFinder

5 June 2018

1 reference

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A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters

5 June 2018

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5 June 2018

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Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3901781

Integration of external signaling pathways with the core transcriptional network in embryonic stem cells

5 June 2018

1 reference

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FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription

5 June 2018

1 reference

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Fast and practical algorithms for planted (l, d) motif search

5 June 2018

1 reference

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Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing

5 June 2018

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Genome-wide mapping of in vivo protein-DNA interactions

5 June 2018

1 reference

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High-resolution profiling of histone methylations in the human genome

5 June 2018

1 reference

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SwissRegulon: a database of genome-wide annotations of regulatory sites

5 June 2018

1 reference

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Assessing computational tools for the discovery of transcription factor binding sites

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3901781

Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes

5 June 2018

1 reference

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5 June 2018

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Subtle motifs: defining the limits of motif finding algorithms

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3901781

Finding motifs using random projections

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3901781

Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3901781

Identifying DNA and protein patterns with statistically significant alignments of multiple sequences

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3901781

Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3901781

Fitting a mixture model by expectation maximization to discover motifs in biopolymers

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3901781

A cluster refinement algorithm for motif discovery

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3901781

An improved heuristic algorithm for finding motif signals in DNA sequences.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3901781

An algorithm for finding signals of unknown length in DNA sequences

18 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0086044

Finding composite regulatory patterns in DNA sequences

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24475069

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0086044

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24475069%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24475069%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

PubMed publication ID

24475069

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24475069%20AND%20SRC:MED&resulttype=core&format=json