(Q41891375)

13 October 2017

Protein-protein docking benchmark version 3.0. (English)

1 reference

13 October 2017

4

Joël Janin

1 reference

13 October 2017

Howook Hwang

1

1 reference

13 October 2017

Brian Pierce

series ordinal

2

1 reference

13 October 2017

Julian Mintseris

series ordinal

3

1 reference

13 October 2017

Zhiping Weng

series ordinal

5

1 reference

13 October 2017

language of work or name

English

0 references

publication date

1 November 2008

1 reference

13 October 2017

1 reference

13 October 2017

73

1 reference

13 October 2017

3

1 reference

13 October 2017

705-709

1 reference

DOCKGROUND system of databases for protein recognition studies: unbound structures for docking

13 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2726780

A novel empirical free energy function that explains and predicts protein-protein binding affinities.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2726780

GRAMM-X public web server for protein-protein docking

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2726780

Protein-Protein Docking Benchmark 2.0: an update

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2726780

5 June 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2726780

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2726780

SCOP: a structural classification of proteins database for the investigation of sequences and structures

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2726780

A simple reference state makes a significant improvement in near-native selections from structurally refined docking decoys

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2726780

FireDock: fast interaction refinement in molecular docking

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2726780

Complex-type-dependent scoring functions in protein-protein docking.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2726780

Protein docking using surface matching and supervised machine learning.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2726780

Identification of near-native structures by clustering protein docking conformations.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2726780

ZRANK: reranking protein docking predictions with an optimized energy function.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2726780

Classification of protein complexes based on docking difficulty.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2726780

A protein-protein docking benchmark.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2726780

Assessment of blind predictions of protein-protein interactions: current status of docking methods

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2726780

Docking unbound proteins using shape complementarity, desolvation, and electrostatics.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2726780

Protein-protein interfaces: properties, preferences, and projections

18 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18491384

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1002/PROT.22106

1 reference

release_nb4ouh4dmffalcyubukftwgv3y

13 October 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/nb4ouh4dmffalcyubukftwgv3y

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

13 October 2017

PubMed publication ID

18491384

1 reference