(Q41939448)

English

Artificial tertiary motifs stabilize trans-cleaving hammerhead ribozymes under conditions of submillimolar divalent ions and high temperatures

scientific article published on December 2004

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scholarly article

1 reference

Europe PubMed Central

14 October 2017

Artificial tertiary motifs stabilize trans-cleaving hammerhead ribozymes under conditions of submillimolar divalent ions and high temperatures (English)

1 reference

Europe PubMed Central

14 October 2017

0 references

author name string

Vanvimon Saksmerprome

1

1 reference

Europe PubMed Central

14 October 2017

Manami Roychowdhury-Saha

2

1 reference

Europe PubMed Central

14 October 2017

Sumedha Jayasena

3

1 reference

Europe PubMed Central

14 October 2017

Anastasia Khvorova

4

1 reference

Europe PubMed Central

14 October 2017

Donald H Burke

5

1 reference

Europe PubMed Central

14 October 2017

language of work or name

0 references

publication date

1 December 2004

1 reference

Europe PubMed Central

14 October 2017

1 reference

Europe PubMed Central

14 October 2017

10

1 reference

Europe PubMed Central

14 October 2017

12

1 reference

Europe PubMed Central

14 October 2017

1916-1924

1 reference

Europe PubMed Central

14 October 2017

describes a project that uses

1 reference

Europe PubMed Central

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC1370680/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

Importance in catalysis of a magnesium ion with very low affinity for a hammerhead ribozyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370680

5 June 2018

Entropy-driven folding of an RNA helical junction: an isothermal titration calorimetric analysis of the hammerhead ribozyme.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370680

5 June 2018

Kinetic analysis of ribozyme-substrate complex formation in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370680

5 June 2018

Molecular mechanism of RNA silencing suppression mediated by p19 protein of tombusviruses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370680

5 June 2018

Structural flexibility and the thermodynamics of helix exchange constrain attenuation and allosteric activation of hammerhead ribozyme TRAPs.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370680

5 June 2018

Peripheral regions of natural hammerhead ribozymes greatly increase their self-cleavage activity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370680

5 June 2018

A helical twist-induced conformational switch activates cleavage in the hammerhead ribozyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370680

5 June 2018

Sequence elements outside the hammerhead ribozyme catalytic core enable intracellular activity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370680

5 June 2018

A biosensor for theophylline based on fluorescence detection of ligand-induced hammerhead ribozyme cleavage.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370680

5 June 2018

Rationally designed allosteric variants of hammerhead ribozymes responsive to the HIV-1 Tat protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370680

5 June 2018

Allosteric hammerhead ribozyme TRAPs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370680

5 June 2018

Efficient trans-cleavage by the Schistosoma mansoni SMalpha1 hammerhead ribozyme in the extreme thermophile Thermus thermophilus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370680

5 June 2018

Structural analysis of metal ion ligation to nucleotides and nucleic acids using pulsed EPR spectroscopy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370680

5 June 2018

The hammerhead cleavage reaction in monovalent cations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370680

5 June 2018

Geometric nomenclature and classification of RNA base pairs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370680

5 June 2018

Identification and characterization of a novel high affinity metal-binding site in the hammerhead ribozyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370680

5 June 2018

RNA folding and misfolding of the hammerhead ribozyme.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370680

5 June 2018

The hammerhead, hairpin and VS ribozymes are catalytically proficient in monovalent cations alone

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370680

5 June 2018

Schistosome satellite DNA encodes active hammerhead ribozymes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370680

5 June 2018

Capturing the structure of a catalytic RNA intermediate: the hammerhead ribozyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370680

5 June 2018

Simian immunodeficiency virus RNA is efficiently encapsidated by human immunodeficiency virus type 1 particles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370680

5 June 2018

Plus and minus RNAs of peach latent mosaic viroid self-cleave in vitro via hammerhead structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370680

5 June 2018

Deprotonation stimulates productive folding in allosteric TRAP hammerhead ribozymes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370680

18 August 2018

Folding of the natural hammerhead ribozyme is enhanced by interaction of auxiliary elements.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370680

18 August 2018

Viral virulence protein suppresses RNA silencing-mediated defense but upregulates the role of microrna in host gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370680

18 August 2018

Diffusely bound Mg2+ ions slightly reorient stems I and II of the hammerhead ribozyme to increase the probability of formation of the catalytic core

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370680

18 August 2018

Solvent Protection of the Hammerhead Ribozyme in the Ground State: Evidence for a Cation-Assisted Conformational Change Leading to Catalysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370680

18 August 2018

Molecular recognition of cAMP by an RNA aptamer.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370680

18 August 2018

Allosteric selection of ribozymes that respond to the second messengers cGMP and cAMP.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370680

18 August 2018

Involvement of a specific metal ion in the transition of the hammerhead ribozyme to its catalytic conformation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370680

18 August 2018

Differential binding of Mg2+, Zn2+, and Cd2+ at two sites in a hammerhead ribozyme motif, determined by 15N NMR

1 reference

https://pubmed.ncbi.nlm.nih.gov/15547137

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The global conformation of an active hammerhead RNA during the process of self-cleavage

1 reference

https://pubmed.ncbi.nlm.nih.gov/15547137

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Activities and relative affinities of divalent metals in unmodified and phosphorothioate-substituted hammerhead ribozymes

1 reference

https://pubmed.ncbi.nlm.nih.gov/15547137

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1261/RNA.7159504

1 reference

Europe PubMed Central

14 October 2017

1 reference

Europe PubMed Central

14 October 2017

1 reference

Europe PubMed Central

14 October 2017

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