(Q41953697)

14 October 2017

Finding coevolving amino acid residues using row and column weighting of mutual information and multi-dimensional amino acid representation (English)

1 reference

14 October 2017

Anders G Pedersen

2

0 references

author name string

Rodrigo Gouveia-Oliveira

series ordinal

1

1 reference

14 October 2017

3 October 2007

1 reference

Algorithms for Molecular Biology

14 October 2017

1 reference

14 October 2017

2

1 reference

14 October 2017

12

1 reference

Creative Commons Attribution 2.0 Generic

14 October 2017

start time

3 October 2007

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

exact match

https://scigraph.springernature.com/pub.10.1186/1748-7188-2-12

0 references

cites work

Predicting residue contacts using pragmatic correlated mutations method: reducing the false positives

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234412

Assessing site-interdependent phylogenetic models of sequence evolution

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234412

A novel method for detecting intramolecular coevolution: adding a further dimension to selective constraints analyses.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234412

Evolutionary information for specifying a protein fold

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234412

Networks of coevolving sites in structural and functional domains of serpin proteins.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234412

Genomic biodiversity, phylogenetics and coevolution in proteins

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234412

A perturbation-based method for calculating explicit likelihood of evolutionary co-variance in multiple sequence alignments.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234412

Evolutionarily conserved networks of residues mediate allosteric communication in proteins

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234412

Mapping pathways of allosteric communication in GroEL by analysis of correlated mutations

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234412

Coevolving protein residues: maximum likelihood identification and relationship to structure.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234412

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234412

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234412

Amino acid substitution matrices from protein blocks

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234412

In silico sequence evolution with site-specific interactions along phylogenetic trees.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234412

Using information theory to search for co-evolving residues in proteins.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234412

Detecting coevolving amino acid sites using Bayesian mutational mapping

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234412

Mutual information in protein multiple sequence alignments reveals two classes of coevolving positions.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234412

Influence of conservation on calculations of amino acid covariance in multiple sequence alignments

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234412

Using multiple interdependency to separate functional from phylogenetic correlations in protein alignments

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234412

MatrixPlot: visualizing sequence constraints.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234412

Structural constraints and emergence of sequence patterns in protein evolution

18 August 2018

1 reference

12 December 2020

Evaluation of a novel method for the identification of coevolving protein residues

1 reference

12 December 2020

Detection and reduction of evolutionary noise in correlated mutation analysis

1 reference

12 December 2020

A METHOD FOR TESTING THE CORRELATED EVOLUTION OF TWO BINARY CHARACTERS: ARE GAINS OR LOSSES CONCENTRATED ON CERTAIN BRANCHES OF A PHYLOGENETIC TREE?

1 reference

12 December 2020

Tests for comparing related amino-acid sequences. Cytochrome c and cytochrome c551

1 reference

12 December 2020

Identifiers

DOI

10.1186/1748-7188-2-12

1 reference

journals/almob/Gouveia-OliveiraP07

14 October 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1748-7188-2-12

PMCID

2234412

1 reference

14 October 2017

1 reference

PMCID

2234412