(Q41955542)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24771341%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

title

iMODS: internal coordinates normal mode analysis server (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24771341%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

author

Enrique S Quintana-Ortí

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24771341%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

Pablo Chacón

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24771341%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

author name string

José Ramón López-Blanco

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24771341%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

José I Aliaga

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24771341%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

publication date

25 April 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24771341%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

published in

Nucleic Acids Research

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24771341%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

volume

42

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24771341%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

issue

Web Server issue

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24771341%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

page(s)

W271-6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24771341%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 3.0 Unported

16 March 2020

copyright license

start time

10 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

KOSMOS: a universal morph server for nucleic acids, proteins and their complexes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086069

NMSim web server: integrated approach for normal mode-based geometric simulations of biologically relevant conformational transitions in proteins

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086069

Optimized torsion-angle normal modes reproduce conformational changes more accurately than cartesian modes

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086069

Normal mode analysis and applications in biological physics

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086069

Gaussian-weighted RMSD superposition of proteins: a structural comparison for flexible proteins and predicted protein structures

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086069

Coarse-grained normal mode analysis in structural biology

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086069

Usefulness and limitations of normal mode analysis in modeling dynamics of biomolecular complexes

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086069

Transconformations of the SERCA1 Ca-ATPase: A Normal Mode Study

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086069

A coarse-grained normal mode approach for macromolecules: an efficient implementation and application to Ca(2+)-ATPase

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086069

Structural changes in the calcium pump accompanying the dissociation of calcium

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086069

A dynamic model for the allosteric mechanism of GroEL

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086069

Crystal structure of the calcium pump of sarcoplasmic reticulum at 2.6 A resolution

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086069

The allosteric mechanism of the chaperonin GroEL: a dynamic analysis

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086069

Collective motions in proteins: A covariance analysis of atomic fluctuations in molecular dynamics and normal mode simulations

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086069

iMODFIT: efficient and robust flexible fitting based on vibrational analysis in internal coordinates

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086069

iMod: multipurpose normal mode analysis in internal coordinates

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086069

Predicting order of conformational changes during protein conformational transitions using an interpolated elastic network model

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086069

FlexServ: an integrated tool for the analysis of protein flexibility.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086069

Protein conformational transitions explored by mixed elastic network models.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086069

Exploring the structural dynamics of the E.coli chaperonin GroEL using translation-libration-screw crystallographic refinement of intermediate states

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086069

Predictions of protein flexibility: first-order measures

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086069

Normal mode analysis for proteins

18 August 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU339

A solution for the best rotation to relate two sets of vectors

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU339

Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU339

Exploring large macromolecular functional motions on clusters of multicore processors

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU339

Approaching Elastic Network Models to Molecular Dynamics Flexibility

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU339

Analysis of domain motions in large proteins

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24771341

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Automated Illustration of Molecular Flexibility

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24771341

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKU339

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24771341%20AND%20SRC:MED&resulttype=core&format=json

journals/nar/Lopez-BlancoAQC14

16 March 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24771341%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

PubMed publication ID

24771341

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24771341%20AND%20SRC:MED&resulttype=core&format=json