(Q41970825)

14 October 2017

Accelerated gene evolution through replication-transcription conflicts (English)

1 reference

14 October 2017

Sandip Paul

1

1 reference

14 October 2017

Samuel Million-Weaver

2

1 reference

14 October 2017

Sujay Chattopadhyay

3

1 reference

14 October 2017

Evgeni Sokurenko

4

1 reference

14 October 2017

Houra Merrikh

5

1 reference

14 October 2017

language of work or name

English

0 references

publication date

1 March 2013

1 reference

14 October 2017

1 reference

14 October 2017

495

1 reference

14 October 2017

7442

1 reference

14 October 2017

512-515

1 reference

https://scigraph.springernature.com/pub.10.1038/nature11989

14 October 2017

0 references

cites work

Mutation frequency and spectrum of mutations vary at different chromosomal positions of Pseudomonas putida

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807732

Replication-transcription conflicts in bacteria.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807732

Replication fork reversal after replication-transcription collision.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807732

Changes in transcriptional orientation are associated with increases in evolutionary rates of enterobacterial genes

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807732

Co-orientation of replication and transcription preserves genome integrity

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807732

High frequency of hotspot mutations in core genes of Escherichia coli due to short-term positive selection.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807732

Fluctuation analysis CalculatOR: a web tool for the determination of mutation rate using Luria-Delbruck fluctuation analysis

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807732

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807732

ZPS: visualization of recent adaptive evolution of proteins

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807732

Transcription-associated mutagenesis in yeast is directly proportional to the level of gene expression and influenced by the direction of DNA replication

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807732

Replication fork stalling at natural impediments

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807732

Interruptions in gene expression drive highly expressed operons to the leading strand of DNA replication

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807732

Mechanisms of transcription-replication collisions in bacteria

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807732

The replication-related organization of bacterial genomes.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807732

Gene essentiality determines chromosome organisation in bacteria

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807732

Multiple sequence alignment with the Clustal series of programs

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807732

DAVID: Database for Annotation, Visualization, and Integrated Discovery

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807732

Essential Bacillus subtilis genes

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807732

SOS mutator activity: unequal mutagenesis on leading and lagging strands.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807732

Unequal fidelity of leading strand and lagging strand DNA replication on the Escherichia coli chromosome

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807732

Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807732

Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807732

On fluctuation analysis: a new, simple and efficient method for computing the expected number of mutants

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807732

The molecular diversity of adaptive convergence.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807732

Causes and evolutionary significance of genetic convergence.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807732

Essentiality, not expressiveness, drives gene-strand bias in bacteria.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807732

Greater susceptibility to mutations in lagging strand of DNA replication in Escherichia coli than in leading strand.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807732

Evolution rates of genes on leading and lagging DNA strands

18 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNATURE11989

Direct restart of a replication fork stalled by a head-on RNA polymerase

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23538833

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NATURE11989

1 reference

Dimensions Publication ID

14 October 2017

0 references

1 reference

14 October 2017

1 reference