(Q41982548)

English

Proofreading and secondary structure processing determine the orientation dependence of CAG x CTG trinucleotide repeat instability in Escherichia coli

scientific article published on 4 March 2007

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scholarly article

1 reference

Europe PubMed Central

14 October 2017

Proofreading and secondary structure processing determine the orientation dependence of CAG x CTG trinucleotide repeat instability in Escherichia coli (English)

1 reference

Europe PubMed Central

14 October 2017

Escherichia coli

object named as

Escherichia coli

1 reference

based on heuristic

inferred from title

author name string

Rabaab Zahra

1

1 reference

Europe PubMed Central

14 October 2017

John K Blackwood

2

1 reference

Europe PubMed Central

14 October 2017

Jill Sales

3

1 reference

Europe PubMed Central

14 October 2017

David R F Leach

4

1 reference

Europe PubMed Central

14 October 2017

language of work or name

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publication date

4 March 2007

1 reference

Europe PubMed Central

14 October 2017

1 reference

Europe PubMed Central

14 October 2017

176

1 reference

Europe PubMed Central

14 October 2017

1

1 reference

Europe PubMed Central

14 October 2017

27-41

1 reference

Europe PubMed Central

14 October 2017

Mechanistic features of CAG*CTG repeat contractions in cultured cells revealed by a novel genetic assay

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

5 June 2018

Transcription influences the types of deletion and expansion products in an orientation-dependent manner from GAC*GTC repeats

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

5 June 2018

Replication stalling at Friedreich's ataxia (GAA)n repeats in vivo.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

5 June 2018

Mutations in Yeast Replication Proteins That Increase CAG/CTG Expansions Also Increase Repeat Fragility

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

5 June 2018

Repair in haploid male germ cells occurs late in differentiation as chromatin is condensing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

5 June 2018

Tools for characterization of Escherichia coli genes of unknown function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

5 June 2018

E. coli Transcription repair coupling factor (Mfd protein) rescues arrested complexes by promoting forward translocation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

5 June 2018

Instability of repetitive DNA sequences: the role of replication in multiple mechanisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

5 June 2018

Evidence for two mechanisms of palindrome-stimulated deletion in Escherichia coli: single-strand annealing and replication slipped mispairing.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

5 June 2018

Genetic instabilities of triplet repeat sequences by recombination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

5 June 2018

Recombination-induced CAG trinucleotide repeat expansions in yeast involve the MRE11-RAD50-XRS2 complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

5 June 2018

Transgenic mice carrying large human genomic sequences with expanded CTG repeat mimic closely the DM CTG repeat intergenerational and somatic instability.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

5 June 2018

Fourteen and counting: unraveling trinucleotide repeat diseases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

5 June 2018

Msh2 deficiency prevents in vivo somatic instability of the CAG repeat in Huntington disease transgenic mice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

5 June 2018

A human DNA editing enzyme homologous to the Escherichia coli DnaQ/MutD protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

5 June 2018

The effect of DNA replication mutations on CAG tract stability in yeast.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

5 June 2018

DNA cleavage and degradation by the SbcCD protein complex from Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

5 June 2018

Slipped misalignment mechanisms of deletion formation: in vivo susceptibility to nucleases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

5 June 2018

CTG repeats show bimodal amplification in E. coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

5 June 2018

Orientation-dependent and sequence-specific expansions of CTG/CAG trinucleotide repeats in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

5 June 2018

Analysis of strand slippage in DNA polymerase expansions of CAG/CTG triplet repeats associated with neurodegenerative disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

5 June 2018

Structural analysis of slipped-strand DNA (S-DNA) formed in (CTG)n. (CAG)n repeats from the myotonic dystrophy locus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

5 June 2018

Methods for generating precise deletions and insertions in the genome of wild-type Escherichia coli: application to open reading frame characterization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

5 June 2018

Overexpression, purification, and characterization of the SbcCD protein from Escherichia coli.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

5 June 2018

Transcription increases the deletion frequency of long CTG.CAG triplet repeats from plasmids in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

5 June 2018

Flexible DNA: genetically unstable CTG.CAG and CGG.CCG from human hereditary neuromuscular disease genes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

5 June 2018

The sbcC and sbcD genes of Escherichia coli encode a nuclease involved in palindrome inviability and genetic recombination.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

5 June 2018

Brain regional differences in the expansion of a CAG repeat in the spinocerebellar ataxias: dentatorubral-pallidoluysian atrophy, Machado-Joseph disease, and spinocerebellar ataxia type 1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

5 June 2018

Stability of a CTG/CAG trinucleotide repeat in yeast is dependent on its orientation in the genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

5 June 2018

Hypermutability of homonucleotide runs in mismatch repair and DNA polymerase proofreading yeast mutants.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

5 June 2018

Orientation dependence of trinucleotide CAG repeat instability in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

5 June 2018

Stability of intrastrand hairpin structures formed by the CAG/CTG class of DNA triplet repeats associated with neurological diseases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

5 June 2018

Somatic mosaicism of expanded CAG repeats in brains of patients with dentatorubral-pallidoluysian atrophy: cellular population-dependent dynamics of mitotic instability

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

5 June 2018

The effects of trinucleotide repeats found in human inherited disorders on palindrome inviability in Escherichia coli suggest hairpin folding preferences in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

5 June 2018

Destabilization of tracts of simple repetitive DNA in yeast by mutations affecting DNA mismatch repair

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

5 June 2018

Trinucleotide repeats that expand in human disease form hairpin structures in vitro

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

5 June 2018

Hairpin properties of single-stranded DNA containing a GC-rich triplet repeat: (CTG)15.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

5 June 2018

Expansion and deletion of CTG repeats from human disease genes are determined by the direction of replication in E. coli.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

5 June 2018

The trinucleotide repeat sequence d(GTC)15 adopts a hairpin conformation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

5 June 2018

Differential DNA secondary structure-mediated deletion mutation in the leading and lagging strands

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

5 June 2018

DNA CTG triplet repeats involved in dynamic mutations of neurologically related gene sequences form stable duplexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

5 June 2018

Mismatch repair in Escherichia coli enhances instability of (CTG)n triplet repeats from human hereditary diseases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

5 June 2018

The purine-rich trinucleotide repeat sequences d(CAG)15 and d(GAC)15 form hairpins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

5 June 2018

Host/vector interactions which affect the viability of recombinant phage lambda clones

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

5 June 2018

(CAG)*(CTG) repeats associated with neurodegenerative diseases are stable in the Escherichia coli chromosome.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

18 August 2018

Systematic localisation of proteins fused to the green fluorescent protein in Bacillus subtilis: identification of new proteins at the DNA replication factory.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

18 August 2018

Genetic recombination destabilizes (CTG)n.(CAG)n repeats in E. coli.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

18 August 2018

Trinucleotide expansion in haploid germ cells by gap repair

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

18 August 2018

Increased trinucleotide repeat instability with advanced maternal age.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

18 August 2018

Enhanced deletion formation by aberrant DNA replication in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

18 August 2018

Structural and functional similarities between the SbcCD proteins of Escherichia coli and the RAD50 and MRE11 (RAD32) recombination and repair proteins of yeast.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1893049

18 August 2018

Hypermutable myotonic dystrophy CTG repeats in transgenic mice

1 reference

https://pubmed.ncbi.nlm.nih.gov/17339223

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Slipped (CTG)*(CAG) repeats can be correctly repaired, escape repair or undergo error-prone repair

1 reference

https://pubmed.ncbi.nlm.nih.gov/17339223

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evidence that errors made by DNA polymerase alpha are corrected by DNA polymerase delta

1 reference

https://pubmed.ncbi.nlm.nih.gov/17339223

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Involvement of the nucleotide excision repair protein UvrA in instability of CAG*CTG repeat sequences in Escherichia coli

1 reference

https://pubmed.ncbi.nlm.nih.gov/17339223

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Triplet repeat DNA structures and human genetic disease: dynamic mutations from dynamic DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/17339223

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Long CTG.CAG repeat sequences markedly stimulate intramolecular recombination

1 reference

https://pubmed.ncbi.nlm.nih.gov/17339223

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Long CTG.CAG repeats from myotonic dystrophy are preferred sites for intermolecular recombination

1 reference

https://pubmed.ncbi.nlm.nih.gov/17339223

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA double-strand breaks induce deletion of CTG.CAG repeats in an orientation-dependent manner in Escherichia coli

1 reference

https://pubmed.ncbi.nlm.nih.gov/17339223

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Expansion and length-dependent fragility of CTG repeats in yeast

1 reference

https://pubmed.ncbi.nlm.nih.gov/17339223

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Expansion of CTG repeats from human disease genes is dependent upon replication mechanisms in Escherichia coli: the effect of long patch mismatch repair revisited

1 reference

https://pubmed.ncbi.nlm.nih.gov/17339223

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Generation of microgram quantities of trinucleotide repeat tracts of defined length, interspersion pattern, and orientation

1 reference

https://pubmed.ncbi.nlm.nih.gov/17339223

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Expansion and deletion of triplet repeat sequences in Escherichia coli occur on the leading strand of DNA replication

1 reference

https://pubmed.ncbi.nlm.nih.gov/17339223

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genetic instabilities in (CTG.CAG) repeats occur by recombination

1 reference

https://pubmed.ncbi.nlm.nih.gov/17339223

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The trinucleotide repeat sequence d(CGG)15 forms a heat-stable hairpin containing Gsyn. Ganti base pairs

1 reference

https://pubmed.ncbi.nlm.nih.gov/17339223

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA polymerase III proofreading mutants enhance the expansion and deletion of triplet repeat sequences in Escherichia coli

1 reference

https://pubmed.ncbi.nlm.nih.gov/17339223

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Two opposing effects of mismatch repair on CTG repeat instability in Escherichia coli

1 reference

https://pubmed.ncbi.nlm.nih.gov/17339223

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gene conversion (recombination) mediates expansions of CTG[middle dot]CAG repeats

1 reference

https://pubmed.ncbi.nlm.nih.gov/17339223

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Modulation of transcription reveals a new mechanism of triplet repeat instability in Escherichia coli

1 reference

https://pubmed.ncbi.nlm.nih.gov/17339223

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1534/GENETICS.106.069724

1 reference

Europe PubMed Central

14 October 2017

1 reference

Europe PubMed Central

14 October 2017

1 reference

Europe PubMed Central

14 October 2017

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