(Q42004186)

15 October 2017

Clustering protein environments for function prediction: finding PROSITE motifs in 3D (English)

1 reference

protein function prediction

15 October 2017

0 references

5

Russ B Altman

1 reference

15 October 2017

1

Sungroh Yoon

1 reference

15 October 2017

4

Giovanni De Micheli

1 reference

15 October 2017

Jessica C Ebert

2

1 reference

PMC publication ID

1892080

15 October 2017

Eui-Young Chung

series ordinal

3

1 reference

15 October 2017

22 May 2007

1 reference

15 October 2017

1 reference

15 October 2017

8 Suppl 4

1 reference

15 October 2017

S10

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2105-8-s4-s10

15 October 2017

0 references

cites work

Automated protein function prediction--the genomic challenge

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892080

Identification of similar regions of protein structures using integrated sequence and structure analysis tools.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892080

5 June 2018

The PROSITE database.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892080

Query3d: a new method for high-throughput analysis of functional residues in protein structures

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892080

Structural characterization of proteins using residue environments

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892080

ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892080

Automated prediction of protein function and detection of functional sites from structure

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892080

Clustering of protein structural fragments reveals modular building block approach of nature.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892080

ArchDB: automated protein loop classification as a tool for structural genomics.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892080

Accurate and scalable identification of functional sites by evolutionary tracing

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892080

An algorithm for constraint-based structural template matching: application to 3D templates with statistical analysis.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892080

A new bioinformatic approach to detect common 3D sites in protein structures.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892080

WebFEATURE: An interactive web tool for identifying and visualizing functional sites on macromolecular structures

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892080

5 June 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892080

THEMATICS: a simple computational predictor of enzyme function from structure

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892080

Recognizing protein binding sites using statistical descriptions of their 3D environments

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892080

Characterizing the microenvironment surrounding protein sites

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892080

Characterizing oriented protein structural sites using biochemical properties

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892080

Recognizing complex, asymmetric functional sites in protein structures using a Bayesian scoring function

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892080

Classification of common functional loops of kinase super-families

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892080

Automated construction of structural motifs for predicting functional sites on protein structures.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892080

Enhanced functional annotation of protein sequences via the use of structural descriptors

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892080

bcl::Cluster : A method for clustering biological molecules coupled with visualization in the Pymol Molecular Graphics System

17 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17570144

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Conserved features in the active site of nonhomologous serine proteases

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17570144

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-8-S4-S10

1 reference

journals/bmcbi/YoonECMA07

15 October 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

PMC publication ID

1892080

15 October 2017

PubMed publication ID

17570144

1 reference

PMC publication ID

1892080