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Galaxy Integrated Omics: Web-based Standards-Compliant Workflows for Proteomics Informed by Transcriptomics.
scientific article published on 12 August 2015
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scholarly article
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Europe PubMed Central
PMC publication ID
4638048
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26269333%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 February 2020
title
Galaxy Integrated Omics: Web-based Standards-Compliant Workflows for Proteomics Informed by Transcriptomics
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
4638048
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26269333%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 February 2020
main subject
RNA sequencing
0 references
transcriptome
0 references
workflow
1 reference
based on heuristic
inferred from title
standards compliance
1 reference
based on heuristic
inferred from title
author
Jun Fan
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
4638048
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26269333%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 February 2020
Shyamasree Saha
series ordinal
2
1 reference
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Europe PubMed Central
PMC publication ID
4638048
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26269333%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 February 2020
Gary L A Barker
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMC publication ID
4638048
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26269333%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 February 2020
Fawaz Ghali
series ordinal
5
1 reference
stated in
Europe PubMed Central
PMC publication ID
4638048
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26269333%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 February 2020
Andrew Jones
series ordinal
6
1 reference
stated in
Europe PubMed Central
PMC publication ID
4638048
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26269333%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 February 2020
David A. Matthews
series ordinal
7
1 reference
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Europe PubMed Central
PMC publication ID
4638048
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26269333%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 February 2020
Conrad Bessant
series ordinal
8
1 reference
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Europe PubMed Central
PMC publication ID
4638048
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26269333%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 February 2020
author name string
Kate J Heesom
series ordinal
4
1 reference
stated in
Europe PubMed Central
PMC publication ID
4638048
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26269333%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 February 2020
publication date
12 August 2015
1 reference
stated in
Europe PubMed Central
PMC publication ID
4638048
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26269333%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 February 2020
published in
Molecular & Cellular Proteomics
1 reference
stated in
Europe PubMed Central
PMC publication ID
4638048
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26269333%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 February 2020
volume
14
1 reference
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Europe PubMed Central
PMC publication ID
4638048
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26269333%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 February 2020
issue
11
1 reference
stated in
Europe PubMed Central
PMC publication ID
4638048
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26269333%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 February 2020
page(s)
3087-3093
1 reference
stated in
Europe PubMed Central
PMC publication ID
4638048
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26269333%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 February 2020
cites work
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PubMed Central
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Flexible and accessible workflows for improved proteogenomic analysis using the Galaxy framework
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5 June 2018
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5 June 2018
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5 June 2018
A critical appraisal of techniques, software packages, and standards for quantitative proteomic analysis
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5 June 2018
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Full-length transcriptome assembly from RNA-Seq data without a reference genome
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5 June 2018
Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
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5 June 2018
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
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TopHat: discovering splice junctions with RNA-Seq
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5 June 2018
RNA-Seq: a revolutionary tool for transcriptomics
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4638048
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5 June 2018
ProteoWizard: open source software for rapid proteomics tools development
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GMAP: a genomic mapping and alignment program for mRNA and EST sequences
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17 August 2018
Identifiers
DOI
10.1074/MCP.O115.048777
1 reference
stated in
Europe PubMed Central
PMC publication ID
4638048
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26269333%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 February 2020
PMC publication ID
4638048
1 reference
stated in
Europe PubMed Central
PMC publication ID
4638048
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26269333%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 February 2020
PubMed publication ID
26269333
1 reference
stated in
Europe PubMed Central
PMC publication ID
4638048
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26269333%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 February 2020
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