(Q42057584)

English

A unification of the elastic network model and the Gaussian network model for optimal description of protein conformational motions and fluctuations

scientific article published on 30 January 2008

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

A unification of the elastic network model and the Gaussian network model for optimal description of protein conformational motions and fluctuations (English)

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

1

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

language of work or name

0 references

publication date

30 January 2008

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

Biophysical Journal

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

94

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

10

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

3853-3857

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

Insights into equilibrium dynamics of proteins from comparison of NMR and X-ray data with computational predictions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367184

5 June 2018

vGNM: a better model for understanding the dynamics of proteins in crystals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367184

5 June 2018

Protein structural variation in computational models and crystallographic data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367184

5 June 2018

The gaussian network model: precise prediction of residue fluctuations and application to binding problems

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367184

5 June 2018

Optimization and evaluation of a coarse-grained model of protein motion using x-ray crystal data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367184

5 June 2018

oGNM: online computation of structural dynamics using the Gaussian Network Model

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367184

5 June 2018

Symmetry, form, and shape: guiding principles for robustness in macromolecular machines.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367184

5 June 2018

Modeling protein conformational changes by iterative fitting of distance constraints using reoriented normal modes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367184

5 June 2018

Elastic network models for understanding biomolecular machinery: from enzymes to supramolecular assemblies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367184

5 June 2018

Coarse-grained normal mode analysis in structural biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367184

5 June 2018

Probing the local dynamics of nucleotide-binding pocket coupled to the global dynamics: myosin versus kinesin.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367184

5 June 2018

Coarse-grained models for proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367184

5 June 2018

Usefulness and limitations of normal mode analysis in modeling dynamics of biomolecular complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367184

5 June 2018

Normal-modes-based prediction of protein conformational changes guided by distance constraints

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367184

5 June 2018

A comparative study of motor-protein motions by using a simple elastic-network model

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367184

5 June 2018

Universality classes in folding times of proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367184

5 June 2018

Molecular dynamics simulations of biomolecules

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367184

5 June 2018

Simplified normal mode analysis of conformational transitions in DNA-dependent polymerases: the elastic network model

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367184

5 June 2018

Dynamics of proteins in crystals: comparison of experiment with simple models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367184

5 June 2018

Conformational change of proteins arising from normal mode calculations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367184

5 June 2018

Anisotropy of fluctuation dynamics of proteins with an elastic network model

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367184

5 June 2018

Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367184

5 June 2018

Anisotropic network model: systematic evaluation and a new web interface.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367184

17 August 2018

Analysis of domain motions by approximate normal mode calculations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367184

17 August 2018

Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367184

1 December 2018

Functional modes of proteins are among the most robust

1 reference

https://pubmed.ncbi.nlm.nih.gov/18234807

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Allostery in a coarse-grained model of protein dynamics

1 reference

https://pubmed.ncbi.nlm.nih.gov/18234807

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of dynamical correlations within the myosin motor domain by the normal mode analysis of an elastic network model

1 reference

https://pubmed.ncbi.nlm.nih.gov/18234807

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

An enhanced elastic network model to represent the motions of domain-swapped proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/18234807

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1529/BIOPHYSJ.107.125831

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

ResearchGate publication ID

0 references

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