(Q42089018)

16 October 2017

Automated tracing of neurites from light microscopy stacks of images (English)

1 reference

16 October 2017

1 reference

1 reference

Paarth Chothani

1

1 reference

16 October 2017

Vivek Mehta

series ordinal

2

1 reference

16 October 2017

Armen Stepanyants

series ordinal

3

1 reference

16 October 2017

1 September 2011

1 reference

16 October 2017

16

0 references

published in

Neuroinformatics

1 reference

16 October 2017

9

1 reference

16 October 2017

2-3

1 reference

16 October 2017

263-278

1 reference

describes a project that uses

16 October 2017

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3336738/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

exact match

https://scigraph.springernature.com/pub.10.1007/s12021-011-9121-2

0 references

cites work

The Structure of the Nervous System of the Nematode Caenorhabditis elegans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336738

The DIADEM metric: comparing multiple reconstructions of the same neuron

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336738

The DIADEM data sets: representative light microscopy images of neuronal morphology to advance automation of digital reconstructions

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336738

Ultrastructural analysis of hippocampal neuropil from the connectomics perspective

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336738

Efficient Skeletonization of Volumetric Objects

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336738

Neuron tracing in perspective

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336738

Advances in light microscopy for neuroscience

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336738

A proposal for a coordinated effort for the determination of brainwide neuroanatomical connectivity in model organisms at a mesoscopic scale

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336738

The fractions of short- and long-range connections in the visual cortex

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336738

The interscutularis muscle connectome

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336738

Detection of the optimal neuron traces in confocal microscopy images

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336738

Ome sweet ome: what can the genome tell us about the connectome?

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336738

Structural plasticity of circuits in cortical neuropil

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336738

A technicolour approach to the connectome

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336738

Transgenic strategies for combinatorial expression of fluorescent proteins in the nervous system

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336738

Automated axon tracking of 3D confocal laser scanning microscopy images using guided probabilistic region merging

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336738

Comprehensive maps of Drosophila higher olfactory centers: spatially segregated fruit and pheromone representation

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336738

Towards neural circuit reconstruction with volume electron microscopy techniques

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336738

Wiring optimization can relate neuronal structure and function

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336738

The human connectome: A structural description of the human brain

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336738

Neurogeometry and potential synaptic connectivity

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336738

Transient and persistent dendritic spines in the neocortex in vivo

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336738

Serial block-face scanning electron microscopy to reconstruct three-dimensional tissue nanostructure

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336738

Long-term in vivo imaging of experience-dependent synaptic plasticity in adult cortex

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336738

Analysis of tubular structures in three-dimensional confocal images

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336738

Morphological changes in dendritic spines associated with long-term synaptic plasticity

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336738

Rapid automated tracing and feature extraction from retinal fundus images using direct exploratory algorithms

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336738

Three-dimensional multi-scale line filter for segmentation and visualization of curvilinear structures in medical images

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336738

An on-line archive of reconstructed hippocampal neurons

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336738

Theory of edge detection.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336738

Local potential connectivity in cat primary visual cortex.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336738

Cell type-specific structural plasticity of axonal branches and boutons in the adult neocortex.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336738

Design of steerable filters for feature detection using canny-like criteria.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336738

Class-specific features of neuronal wiring

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336738

Automated algorithms for multiscale morphometry of neuronal dendrites

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336738

Long-term dendritic spine stability in the adult cortex

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336738

Rapid automated three-dimensional tracing of neurons from confocal image stacks

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336738

Geometry and structural plasticity of synaptic connectivity.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336738

Fast extraction of minimal paths in 3D images and applications to virtual endoscopy

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336738

A note on two problems in connexion with graphs

17 August 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12021-011-9121-2

Snakes: Active contour models

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12021-011-9121-2

21 January 2018

Theory of Edge Detection

1 reference

https://api.crossref.org/works/10.1007%2FS12021-011-9121-2

3D MRA coronary axis determination using a minimum cost path approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12021-011-9121-2

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12021-011-9121-2

Automatic neuron tracing in volumetric microscopy images with anisotropic path searching

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21562803

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Steerable features for statistical 3D dendrite detection

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21562803

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1007/S12021-011-9121-2

1 reference

16 October 2017

journals/ni/ChothaniMS11

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

16 October 2017

PubMed publication ID

21562803

1 reference