(Q42092310)

16 October 2017

Protein content of minimal and ancestral ribosome (English)

1 reference

16 October 2017

Arcady Mushegian

1

0 references

language of work or name

English

0 references

publication date

25 July 2005

1 reference

16 October 2017

1 reference

16 October 2017

11

1 reference

16 October 2017

9

1 reference

16 October 2017

1400-1406

1 reference

Comparative genomics, minimal gene-sets and the last universal common ancestor

16 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370823

SCOP database in 2004: refinements integrate structure and sequence family data

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370823

The COG database: an updated version includes eukaryotes

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370823

RNA, the first macromolecular catalyst: the ribosome is a ribozyme

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370823

Structural basis of the ribosomal machinery for peptide bond formation, translocation, and nascent chain progression

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370823

Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and dominance of horizontal gene transfer in the evolution of prokaryotes

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370823

Comparative analysis of ribosomal proteins in complete genomes: an example of reductive evolution at the domain scale

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370823

Comparative genomics and evolution of proteins involved in RNA metabolism

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370823

The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370823

High resolution structure of the large ribosomal subunit from a mesophilic eubacterium

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370823

The Last Universal Common Ancestor (LUCA), Simple or Complex?

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370823

Structure of the S15,S6,S18-rRNA complex: assembly of the 30S ribosome central domain

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370823

Functional genomics and enzyme evolution. Homologous and analogous enzymes encoded in microbial genomes

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370823

Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370823

A genomic perspective on protein families

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370823

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370823

The roles of ribosomal proteins in the structure assembly, and evolution of the large ribosomal subunit

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370823

Bayesian gene/species tree reconciliation and orthology analysis using MCMC.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370823

Crystal structure of the 30 s ribosomal subunit from Thermus thermophilus: structure of the proteins and their interactions with 16 s RNA

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370823

The evolutionary history of ribosomal protein RpS14: horizontal gene transfer at the heart of the ribosome

30 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16043494

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Modeling a minimal ribosome based on comparative sequence analysis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16043494

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Non-orthologous gene displacement

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16043494

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1261/RNA.2180205

1 reference

16 October 2017

1 reference

PMC publication ID

1370823

16 October 2017

PubMed publication ID

16043494

1 reference

PMC publication ID

1370823