(Q42101967)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23814184%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

title

Computational methods to detect conserved non-genic elements in phylogenetically isolated genomes: application to zebrafish (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23814184%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

0 references

Michael Hiller

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23814184%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

Saatvik Agarwal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23814184%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

Ravi Parikh

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23814184%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

Harendra Guturu

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23814184%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

Aaron M Wenger

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23814184%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

publication date

27 June 2013

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23814184%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

published in

Nucleic Acids Research

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23814184%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

volume

41

1 reference

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4 March 2020

issue

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23814184%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

page(s)

e151

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23814184%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution-NonCommercial 3.0 Unported

4 March 2020

copyright license

start time

8 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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29 May 2018

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29 May 2018

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29 May 2018

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A girl with an atypical form of ataxia telangiectasia and an additional de novo 3.14 Mb microduplication in region 19q12.

29 May 2018

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29 May 2018

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Evo-devo, deep homology and FoxP2: implications for the evolution of speech and language

29 May 2018

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Genome-wide identification of conserved regulatory function in diverged sequences

29 May 2018

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Integration of the genetic map and genome assembly of fugu facilitates insights into distinct features of genome evolution in teleosts and mammals

29 May 2018

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Zebrafish as a genomics model for human neurological and polygenic disorders

29 May 2018

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Identification of cis regulatory features in the embryonic zebrafish genome through large-scale profiling of H3K4me1 and H3K4me3 binding sites

29 May 2018

1 reference

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RNAcode: robust discrimination of coding and noncoding regions in comparative sequence data.

29 May 2018

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PHAST and RPHAST: phylogenetic analysis with space/time models

29 May 2018

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Histone H3K27ac separates active from poised enhancers and predicts developmental state

29 May 2018

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ZFIN: enhancements and updates to the Zebrafish Model Organism Database

29 May 2018

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Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753653

ChIP-Seq identification of weakly conserved heart enhancers

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753653

The Amphimedon queenslandica genome and the evolution of animal complexity

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753653

An 8q24 gene desert variant associated with prostate cancer risk confers differential in vivo activity to a MYC enhancer

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753653

GREAT improves functional interpretation of cis-regulatory regions

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753653

The genome of the Western clawed frog Xenopus tropicalis

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753653

The dynamic genome of Hydra

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753653

Long-range gene regulation links genomic type 2 diabetes and obesity risk regions to HHEX, SOX4, and IRX3

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753653

Early evolution of conserved regulatory sequences associated with development in vertebrates

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753653

Genomic views of distant-acting enhancers

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753653

ZNF536, a novel zinc finger protein specifically expressed in the brain, negatively regulates neuron differentiation by repressing retinoic acid-induced gene transcription

29 May 2018

1 reference

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cneViewer: a database of conserved non-coding elements for studies of tissue-specific gene regulation.

29 May 2018

1 reference

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The amphioxus genome and the evolution of the chordate karyotype

29 May 2018

1 reference

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Long-range gene control and genetic disease

29 May 2018

1 reference

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Ancora: a web resource for exploring highly conserved noncoding elements and their association with developmental regulatory genes

29 May 2018

1 reference

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Ultraconservation identifies a small subset of extremely constrained developmental enhancers

29 May 2018

1 reference

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Metrics of sequence constraint overlook regulatory sequences in an exhaustive analysis at phox2b

29 May 2018

1 reference

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Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures

29 May 2018

1 reference

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CONDOR: a database resource of developmentally associated conserved non-coding elements

29 May 2018

1 reference

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Sea Anemone Genome Reveals Ancestral Eumetazoan Gene Repertoire and Genomic Organization

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753653

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753653

Phylogenetic relationships of Danio within the order Cypriniformes: a framework for comparative and evolutionary studies of a model species

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753653

Thousands of human mobile element fragments undergo strong purifying selection near developmental genes

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753653

Animal models of human disease: zebrafish swim into view

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753653

Survey sequencing and comparative analysis of the elephant shark (Callorhinchus milii) genome

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753653

Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753653

Parallel evolution of conserved non-coding elements that target a common set of developmental regulatory genes from worms to humans

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753653

VISTA Enhancer Browser--a database of tissue-specific human enhancers

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753653

The genome of the sea urchin Strongylocentrotus purpuratus

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753653

Close sequence comparisons are sufficient to identify human cis-regulatory elements.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753653

Differences between pair-wise and multi-sequence alignment methods affect vertebrate genome comparisons

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753653

Human-zebrafish non-coding conserved elements act in vivo to regulate transcription

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753653

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753653

Highly conserved non-coding sequences are associated with vertebrate development

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753653

Arrays of ultraconserved non-coding regions span the loci of key developmental genes in vertebrate genomes

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753653

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753653

Reconstructing large regions of an ancestral mammalian genome in silico

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753653

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753653

ECR Browser: a tool for visualizing and accessing data from comparisons of multiple vertebrate genomes

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753653

Ultraconserved Elements in the Human Genome

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753653

Aligning multiple genomic sequences with the threaded blockset aligner

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753653

Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753653

Human-mouse alignments with BLASTZ

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753653

Initial sequencing and comparative analysis of the mouse genome

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753653

Basic local alignment search tool

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753653

The fishes of Genome 10K.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753653

Transcriptional features of genomic regulatory blocks

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753653

Systematic human/zebrafish comparative identification of cis-regulatory activity around vertebrate developmental transcription factor genes.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753653

Phylogenetic relationships of Cyprinidae (Teleostei: Cypriniformes) inferred from the partial S6K1 gene sequences and implication of indel sites in intron 1.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753653

17 August 2018

Identifiers

DOI

10.1093/NAR/GKT557

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23814184%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23814184%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

PubMed publication ID

23814184

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23814184%20AND%20SRC:MED&resulttype=core&format=json