(Q42108763)

English

Rates of nucleotide substitution and mammalian nuclear gene evolution. Approximate and maximum-likelihood methods lead to different conclusions.

scientific article published on November 2000

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scholarly article

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Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11063703%20AND%20SRC:MED&resulttype=core&format=json

1 November 2019

Rates of nucleotide substitution and mammalian nuclear gene evolution. Approximate and maximum-likelihood methods lead to different conclusions (English)

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11063703%20AND%20SRC:MED&resulttype=core&format=json

1 November 2019

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author name string

Bielawski JP

1

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1 November 2019

Dunn KA

2

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1 November 2019

Yang Z

3

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1 November 2019

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1 November 2000

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1 November 2019

number of pages

10

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1 November 2019

156

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1 November 2019

1299-1308

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Europe PubMed Central

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1 November 2019

3

1 reference

Europe PubMed Central

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1 November 2019

Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461304

29 May 2018

The effect of tandem substitutions on the correlation between synonymous and nonsynonymous rates in rodents

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461304

29 May 2018

Chromosomal location effects on gene sequence evolution in mammals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461304

29 May 2018

Isochores result from mutation not selection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461304

29 May 2018

Evidence of selection on silent site base composition in mammals: potential implications for the evolution of isochores and junk DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461304

29 May 2018

Isochore evolution in mammals: a human-like ancestral structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461304

29 May 2018

Synonymous and nonsynonymous substitution distances are correlated in mouse and rat genes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461304

29 May 2018

Synonymous and nonsynonymous rate variation in nuclear genes of mammals.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461304

29 May 2018

Evolution of codon usage bias in Drosophila

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461304

29 May 2018

Variation in synonymous substitution rates among mammalian genes and the correlation between synonymous and nonsynonymous divergences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461304

29 May 2018

Evolution of the Zfx and Zfy genes: rates and interdependence between the genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461304

29 May 2018

The vertebrate genome: isochores and evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461304

29 May 2018

Mammalian gene evolution: nucleotide sequence divergence between mouse and rat

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461304

29 May 2018

Synonymous codon usage in Drosophila melanogaster: natural selection and translational accuracy.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461304

29 May 2018

A codon-based model of nucleotide substitution for protein-coding DNA sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461304

29 May 2018

A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461304

29 May 2018

A new method for calculating evolutionary substitution rates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461304

29 May 2018

The mosaic genome of warm-blooded vertebrates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461304

29 May 2018

Amino acid composition and the evolutionary rates of protein-coding genes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461304

29 May 2018

A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461304

29 May 2018

Compositional patterns in vertebrate genomes: conservation and change in evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461304

29 May 2018

"Silent" sites in Drosophila genes are not neutral: evidence of selection among synonymous codons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461304

29 May 2018

Compositional constraints and genome evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461304

29 May 2018

Mutation rates differ among regions of the mammalian genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461304

29 May 2018

The 'effective number of codons' used in a gene

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461304

29 May 2018

Synonymous nucleotide substitution rates in mammalian genes: implications for the molecular clock and the relationship of mammalian orders

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461304

29 May 2018

The distribution of genes in the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461304

29 May 2018

DNA mismatch repair and synonymous codon evolution in mammals.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461304

17 August 2018

Why the rate of silent codon substitutions is variable within a vertebrate's genome.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1461304

17 August 2018

Frequencies of synonymous substitutions in mammals are gene-specific and correlated with frequencies of nonsynonymous substitutions

1 reference

https://pubmed.ncbi.nlm.nih.gov/11063703

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Human coding and noncoding DNA: compositional correlations

1 reference

https://pubmed.ncbi.nlm.nih.gov/11063703

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Synonymous and nonsynonymous substitutions in mammalian genes: intragenic correlations

1 reference

https://pubmed.ncbi.nlm.nih.gov/11063703

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular clock of silent substitution: at least six-fold preponderance of silent changes in mitochondrial genes over those in nuclear genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/11063703

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nucleic acid composition, codon usage, and the rate of synonymous substitution in protein-coding genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/11063703

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA microenvironments and the molecular clock

1 reference

https://pubmed.ncbi.nlm.nih.gov/11063703

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Codon usage changes and sequence dissimilarity between human and rat

1 reference

https://pubmed.ncbi.nlm.nih.gov/11063703

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Silent substitutions in mammalian genomes and their evolutionary implications

1 reference

https://pubmed.ncbi.nlm.nih.gov/11063703

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

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Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11063703%20AND%20SRC:MED&resulttype=core&format=json

1 November 2019

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11063703%20AND%20SRC:MED&resulttype=core&format=json

1 November 2019

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