(Q42129039)

17 October 2017

Coarse-graining protein structures with local multivariate features from molecular dynamics (English)

1 reference

17 October 2017

multivariate statistics

1 reference

Zhiyong Zhang

1

1 reference

17 October 2017

Willy Wriggers

series ordinal

2

1 reference

17 October 2017

language of work or name

English

0 references

publication date

15 October 2008

1 reference

Journal of Physical Chemistry B

17 October 2017

1 reference

17 October 2017

112

1 reference

17 October 2017

44

1 reference

17 October 2017

14026-14035

1 reference

Molecular dynamics: survey of methods for simulating the activity of proteins

17 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651751

Electron cryo-microscopy shows how strong binding of myosin to actin releases nucleotide

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651751

Molecular dynamics simulations of peptides and proteins with amplified collective motions

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651751

Molecular dynamics simulations of biomolecules

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651751

Enzymology. A moving story

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651751

Structural mechanism of muscle contraction.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651751

Collective protein dynamics in relation to function

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651751

Millisecond time scale conformational flexibility in a hyperthermophile protein at ambient temperature

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651751

Investigating protein dynamics in collective coordinate space

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651751

Domain motions in bacteriophage T4 lysozyme: a comparison between molecular dynamics and crystallographic data.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651751

VMD: visual molecular dynamics

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651751

Missense mutations in the beta-myosin heavy-chain gene cause central core disease in hypertrophic cardiomyopathy

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651751

Three-dimensional structure of myosin subfragment-1: a molecular motor

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651751

Essential dynamics of proteins

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651751

A sampling problem in molecular dynamics simulations of macromolecules

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651751

Protein flexibility and adaptability seen in 25 crystal forms of T4 lysozyme

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651751

A mutant T4 lysozyme displays five different crystal conformations

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651751

Can principal components yield a dimension reduced description of protein dynamics on long time scales?

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651751

On the convergence of the conformational coordinates basis set obtained by the essential dynamics analysis of proteins' molecular dynamics simulations.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651751

Local feature analysis: a statistical theory for reproducible essential dynamics of large macromolecules

17 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18855436

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Full correlation analysis of conformational protein dynamics

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18855436

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The essential dynamics of thermolysin: Confirmation of the hinge-bending motion and comparison of simulations in vacuum and water

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18855436

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1021/JP806291P

1 reference

17 October 2017

1 reference

17 October 2017

PubMed publication ID

18855436

1 reference