(Q42131537)

17 October 2017

A web interface for easy flexible protein-protein docking with ATTRACT (English)

1 reference

17 October 2017

4

Martin Zacharias

1 reference

17 October 2017

Sjoerd J de Vries

1

1 reference

17 October 2017

Christina E M Schindler

series ordinal

2

1 reference

17 October 2017

Isaure Chauvot de Beauchêne

series ordinal

3

1 reference

17 October 2017

language of work or name

English

0 references

publication date

1 February 2015

1 reference

17 October 2017

4

1 reference

based on heuristic

inferred from page(s)

published in

Biophysical Journal

1 reference

17 October 2017

108

1 reference

17 October 2017

3

1 reference

17 October 2017

462-465

1 reference

ZDOCK server: interactive docking prediction of protein-protein complexes and symmetric multimers

17 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4317529

Docking, scoring, and affinity prediction in CAPRI.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4317529

SwarmDock: a server for flexible protein-protein docking.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4317529

ATTRACT-EM: a new method for the computational assembly of large molecular machines using cryo-EM maps

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4317529

Protein-DNA docking with a coarse-grained force field

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4317529

A coarse-grained force field for Protein-RNA docking

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4317529

CPORT: a consensus interface predictor and its performance in prediction-driven docking with HADDOCK.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4317529

HexServer: an FFT-based protein docking server powered by graphics processors.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4317529

The HADDOCK web server for data-driven biomolecular docking

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4317529

The RosettaDock server for local protein-protein docking

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4317529

Protein-protein docking in CAPRI using ATTRACT to account for global and local flexibility.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4317529

GRAMM-X public web server for protein-protein docking

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4317529

Accounting for global protein deformability during protein-protein and protein-ligand docking

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4317529

PatchDock and SymmDock: servers for rigid and symmetric docking

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4317529

ClusPro: a fully automated algorithm for protein-protein docking

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4317529

Protein-protein docking with a reduced protein model accounting for side-chain flexibility

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4317529

Structural basis of chemokine sequestration by a herpesvirus decoy receptor

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4317529

Critical role for a high-affinity chemokine-binding protein in gamma-herpesvirus-induced lethal meningitis

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4317529

Complete sequence and genomic analysis of murine gammaherpesvirus 68

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4317529

The structure of MCP-1 in two crystal forms provides a rare example of variable quaternary interactions

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4317529

Flexible docking and refinement with a coarse-grained protein model using ATTRACT.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4317529

Binding site prediction and improved scoring during flexible protein-protein docking with ATTRACT.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4317529

Energy minimization in low-frequency normal modes to efficiently allow for global flexibility during systematic protein-protein docking.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4317529

ATTRACT: protein-protein docking in CAPRI using a reduced protein model.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4317529

iATTRACT: simultaneous global and local interface optimization for protein-protein docking refinement

17 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25650913

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.BPJ.2014.12.015

1 reference

17 October 2017

1 reference

17 October 2017

PubMed publication ID

25650913

1 reference