(Q42138422)

English

Conjugal transfer of polychlorinated biphenyl/biphenyl degradation genes in Acidovorax sp. strain KKS102, which are located on an integrative and conjugative element.

scientific article published on 8 June 2012

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scholarly article

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4 February 2020

Conjugal transfer of polychlorinated biphenyl/biphenyl degradation genes in Acidovorax sp. strain KKS102, which are located on an integrative and conjugative element (English)

1 reference

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4 February 2020

polychlorinated biphenyl

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object named as

polychlorinated biphenyl

3 August 2023

7

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4 February 2020

author name string

Yoshiyuki Ohtsubo

1

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4 February 2020

Yoko Ishibashi

2

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4 February 2020

Hideaki Naganawa

3

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4 February 2020

Satoshi Hirokawa

4

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4 February 2020

Satomi Atobe

5

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4 February 2020

Yuji Nagata

6

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4 February 2020

publication date

8 June 2012

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4 February 2020

Journal of Bacteriology

1 reference

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4 February 2020

194

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4 February 2020

16

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4 February 2020

4237-4248

1 reference

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22685277%20AND%20SRC:MED&resulttype=core&format=json

4 February 2020

Complete genome sequence of the representative γ-hexachlorocyclohexane-degrading bacterium Sphingobium japonicum UT26.

1 reference

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29 May 2018

ICEEc2, a new integrative and conjugative element belonging to the pKLC102/PAGI-2 family, identified in Escherichia coli strain BEN374.

1 reference

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29 May 2018

Integrative and conjugative elements: mosaic mobile genetic elements enabling dynamic lateral gene flow.

1 reference

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Identification of Burkholderia multivorans ATCC 17616 genes induced in soil environment by in vivo expression technology.

1 reference

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Novel Tn4371-ICE like element in Ralstonia pickettii and genome mining for comparative elements

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29 May 2018

A modular master on the move: the Tn916 family of mobile genetic elements.

1 reference

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29 May 2018

GenomeMatcher: a graphical user interface for DNA sequence comparison

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Revised nomenclature for transposable genetic elements

1 reference

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Characterization of the traD operon of naphthalene-catabolic plasmid NAH7: a host-range modifier in conjugative transfer

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Functional analysis of unique class II insertion sequence IS1071.

1 reference

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Shaping bacterial genomes with integrative and conjugative elements

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29 May 2018

The biphenyl- and 4-chlorobiphenyl-catabolic transposon Tn4371, a member of a new family of genomic islands related to IncP and Ti plasmids.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3416211

29 May 2018

Characterization of two alternative promoters for integrase expression in the clc genomic island of Pseudomonas sp. strain B13.

1 reference

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Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440

1 reference

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29 May 2018

Conjugative transposons: the tip of the iceberg.

1 reference

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29 May 2018

R391: a conjugative integrating mosaic comprised of phage, plasmid, and transposon elements

1 reference

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MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

1 reference

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29 May 2018

A 90-kilobase conjugative chromosomal element coding for biphenyl and salicylate catabolism in Pseudomonas putida KF715

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3416211

29 May 2018

Chromosomal integration, tandem amplification, and deamplification in Pseudomonas putida F1 of a 105-kilobase genetic element containing the chlorocatechol degradative genes from Pseudomonas sp. Strain B13.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3416211

29 May 2018

Plasposons: modular self-cloning minitransposon derivatives for rapid genetic analysis of gram-negative bacterial genomes.

1 reference

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An improved GFP cloning cassette designed for prokaryotic transcriptional fusions

1 reference

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tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3416211

29 May 2018

Identification of the bphA4 gene encoding ferredoxin reductase involved in biphenyl and polychlorinated biphenyl degradation in Pseudomonas sp. strain KKS102

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3416211

29 May 2018

Identification of the bphA and bphB genes of Pseudomonas sp. strains KKS102 involved in degradation of biphenyl and polychlorinated biphenyls

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3416211

29 May 2018

Nucleotide sequence and functional analysis of the meta-cleavage pathway involved in biphenyl and polychlorinated biphenyl degradation in Pseudomonas sp. strain KKS102

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3416211

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The aerobic pseudomonads: a taxonomic study

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Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors

1 reference

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29 May 2018

Cloning and sequencing of two tandem genes involved in degradation of 2,3-dihydroxybiphenyl to benzoic acid in the polychlorinated biphenyl-degrading soil bacterium Pseudomonas sp. strain KKS102.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3416211

29 May 2018

New mobile genetic elements in Cupriavidus metallidurans CH34, their possible roles and occurrence in other bacteria.

1 reference

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1 reference

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17 August 2018

The dual functions of biphenyl-degrading ability of Pseudomonas sp. KKS102: energy acquisition and substrate detoxification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3416211

17 August 2018

BphS, a key transcriptional regulator of bph genes involved in polychlorinated biphenyl/biphenyl degradation in Pseudomonas sp. KKS102.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3416211

17 August 2018

Tn4371: A modular structure encoding a phage-like integrase, a Pseudomonas-like catabolic pathway, and RP4/Ti-like transfer functions.

1 reference

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Identification of a response regulator gene for catabolite control from a PCB-degrading beta-proteobacteria, Acidovorax sp. KKS102

1 reference

https://pubmed.ncbi.nlm.nih.gov/22685277

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Excision and transfer of the Mesorhizobium loti R7A symbiosis island requires an integrase IntS, a novel recombination directionality factor RdfS, and a putative relaxase RlxS

1 reference

https://pubmed.ncbi.nlm.nih.gov/22685277

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1128/JB.00352-12

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Europe PubMed Central

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4 February 2020

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Europe PubMed Central

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4 February 2020

1 reference

Europe PubMed Central

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4 February 2020

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