(Q42139943)

English

Exact p-value calculation for heterotypic clusters of regulatory motifs and its application in computational annotation of cis-regulatory modules

scientific article published on 10 October 2007

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

Exact p-value calculation for heterotypic clusters of regulatory motifs and its application in computational annotation of cis-regulatory modules (English)

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

1 reference

based on heuristic

inferred from title

Mikhail A. Roytberg

4

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

Vsevolod Makeev

5

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

author name string

Valentina Boeva

1

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

Julien Clément

2

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

Mireille Régnier

3

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

publication date

10 October 2007

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

Algorithms for Molecular Biology

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

2

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

13

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

copyright license

Creative Commons Attribution 2.0 Generic

10 October 2007

1 reference

April 2022 Public Data File from Crossref

copyright status

1 reference

April 2022 Public Data File from Crossref

https://scigraph.springernature.com/pub.10.1186/1748-7188-2-13

0 references

Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174486

29 May 2018

DNA microarray technologies for measuring protein-DNA interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174486

29 May 2018

Practical strategies for discovering regulatory DNA sequence motifs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174486

29 May 2018

A survey of motif discovery methods in an integrated framework

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174486

29 May 2018

Discovering functional transcription-factor combinations in the human cell cycle

1 reference

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29 May 2018

Assessing computational tools for the discovery of transcription factor binding sites

1 reference

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29 May 2018

Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174486

29 May 2018

Transcriptional regulatory code of a eukaryotic genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174486

29 May 2018

Identifying combinatorial regulation of transcription factors and binding motifs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174486

29 May 2018

A regulatory code for neurogenic gene expression in the Drosophila embryo

1 reference

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29 May 2018

Computational detection of cis -regulatory modules.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174486

29 May 2018

Distance preferences in the arrangement of binding motifs and hierarchical levels in organization of transcription regulatory information.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174486

29 May 2018

Computational approaches to identify promoters and cis-regulatory elements in plant genomes

1 reference

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29 May 2018

Cluster-Buster: Finding dense clusters of motifs in DNA sequences.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174486

29 May 2018

Target Explorer: An automated tool for the identification of new target genes for a specified set of transcription factors

1 reference

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29 May 2018

Homotypic regulatory clusters in Drosophila.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174486

29 May 2018

Detection and visualization of compositionally similar cis-regulatory element clusters in orthologous and coordinately controlled genes

1 reference

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29 May 2018

Exploring genetic regulatory networks in metazoan development: methods and models

1 reference

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29 May 2018

Identification of the binding sites of regulatory proteins in bacterial genomes

1 reference

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29 May 2018

SCORE: a computational approach to the identification of cis-regulatory modules and target genes in whole-genome sequence data. Site clustering over random expectation.

1 reference

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29 May 2018

Extraction of functional binding sites from unique regulatory regions: the Drosophila early developmental enhancers.

1 reference

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29 May 2018

Genome-wide analysis of clustered Dorsal binding sites identifies putative target genes in the Drosophila embryo

1 reference

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29 May 2018

Detection of cis-element clusters in higher eukaryotic DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174486

29 May 2018

Combinatorial motif analysis and hypothesis generation on a genomic scale

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174486

29 May 2018

Identification of regulatory regions which confer muscle-specific gene expression.

1 reference

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A computational genomics approach to the identification of gene networks

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29 May 2018

Cooperative interactions between paired domain and homeodomain.

1 reference

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29 May 2018

Methods for calculating the probabilities of finding patterns in sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174486

29 May 2018

Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase

1 reference

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29 May 2018

In vitro selection of RNA molecules that bind specific ligands

1 reference

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29 May 2018

Regulation of even-skipped stripe 2 in the Drosophila embryo

1 reference

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29 May 2018

ClusterDraw web server: a tool to identify and visualize clusters of binding motifs for transcription factors

1 reference

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17 August 2018

Computing exact P-values for DNA motifs.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174486

17 August 2018

Comparison of statistical significance criteria.

1 reference

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17 August 2018

Finding motifs in promoter regions.

1 reference

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17 August 2018

Searching for transcription factor binding site clusters: how true are true positives?

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A self-organizing system of repressor gradients establishes segmental complexity in Drosophila.

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Searching for statistically significant regulatory modules.

1 reference

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17 August 2018

New computational approaches for analysis of cis-regulatory networks.

1 reference

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Separating real motifs from their artifacts.

1 reference

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Central limit theorem for renewal theory for several patterns

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Control of tailless expression by bicoid, dorsal and synergistically interacting terminal system regulatory elements

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Selection of DNA binding sites by regulatory proteins. Functional specificity and pseudosite competition

1 reference

https://pubmed.ncbi.nlm.nih.gov/17927813

12 December 2020

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Detecting localized repeats in genomic sequences: a new strategy and its application to Bacillus subtilis and Arabidopsis thaliana sequences

1 reference

https://pubmed.ncbi.nlm.nih.gov/17927813

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Genes regulated cooperatively by one or more transcription factors and their identification in whole eukaryotic genomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/17927813

12 December 2020

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[Constructive synergism of regulatory genes expressed in the course of the eye and muscle development and regeneration]

1 reference

https://pubmed.ncbi.nlm.nih.gov/17927813

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inferred from PubMed ID database lookup

Regulatory modules shared within gene classes as well as across gene classes can be detected by the same in silico approach

1 reference

https://pubmed.ncbi.nlm.nih.gov/17927813

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1748-7188-2-13

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

DBLP publication ID

journals/almob/BoevaCRRM07

1 reference

DBLP Dataset 2021-01-02

28 January 2021

Dimensions Publication ID

0 references

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

ResearchGate publication ID

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