(Q42177150)

18 October 2017

Prediction of kinase-specific phosphorylation sites using conditional random fields (English)

1 reference

18 October 2017

1 reference

Kris Laukens

4

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author name string

Thanh Hai Dang

series ordinal

1

1 reference

18 October 2017

Koenraad Van Leemput

series ordinal

2

1 reference

18 October 2017

Alain Verschoren

series ordinal

3

1 reference

18 October 2017

language of work or name

English

0 references

publication date

20 October 2008

1 reference

18 October 2017

8

1 reference

based on heuristic

inferred from page(s)

published in

Bioinformatics

1 reference

18 October 2017

24

1 reference

18 October 2017

24

1 reference

18 October 2017

2857-2864

1 reference

PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites

18 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639296

Kernel-based data fusion for gene prioritization

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639296

KinasePhos 2.0: a web server for identifying protein kinase-specific phosphorylation sites based on sequences and coupling patterns

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639296

pkaPS: prediction of protein kinase A phosphorylation sites with the simplified kinase-substrate binding model

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639296

PPSP: prediction of PK-specific phosphorylation site with Bayesian decision theory

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639296

Substrate specificity of protein kinases and computational prediction of substrates

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639296

KinasePhos: a web tool for identifying protein kinase-specific phosphorylation sites

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639296

GPS: a comprehensive www server for phosphorylation sites prediction

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639296

Phospho.ELM: a database of experimentally verified phosphorylation sites in eukaryotic proteins

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639296

Prediction of post-translational glycosylation and phosphorylation of proteins from the amino acid sequence

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639296

PhosphoSite: A bioinformatics resource dedicated to physiological protein phosphorylation

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639296

Modification-specific proteomics: characterization of post-translational modifications by mass spectrometry.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639296

The importance of intrinsic disorder for protein phosphorylation

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639296

Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639296

The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639296

The protein kinase complement of the human genome

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639296

Sequence and structure-based prediction of eukaryotic protein phosphorylation sites

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639296

Clustering of phosphorylation site recognition motifs can be exploited to predict the targets of cyclin-dependent kinase

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639296

Meta-prediction of phosphorylation sites with weighted voting and restricted grid search parameter selection

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639296

AutoMotif Server for prediction of phosphorylation sites in proteins using support vector machine: 2007 update

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639296

PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639296

Phospho.ELM: a database of phosphorylation sites--update 2008.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639296

NetPhosYeast: prediction of protein phosphorylation sites in yeast.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639296

A support vector machine approach to the identification of phosphorylation sites

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639296

GPS: a novel group-based phosphorylation predicting and scoring method.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639296

Prediction of phosphorylation sites using SVMs

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639296

Incorporating hidden Markov models for identifying protein kinase-specific phosphorylation sites

17 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18940828

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/BIOINFORMATICS/BTN546

1 reference

journals/bioinformatics/DangLVL08

18 October 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

18 October 2017

PubMed publication ID

18940828

1 reference