(Q42181931)

18 October 2017

Identification of DNA methylation biomarkers from Infinium arrays (English)

1 reference

18 October 2017

0 references

0 references

Richard D Emes

2

0 references

author name string

Frank Wessely

series ordinal

1

1 reference

18 October 2017

25 August 2012

1 reference

18 October 2017

Frontiers in Genetics

1 reference

18 October 2017

3

1 reference

18 October 2017

161

1 reference

PMC publication ID

3427494

describes a project that uses

18 October 2017

limma

object named as

limma

Limma

2 references

22 June 2022

https://europepmc.org/article/PMC/3427494

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

SWAN: Subset-quantile within array normalization for illumina infinium HumanMethylation450 BeadChips

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427494

Complete pipeline for Infinium(®) Human Methylation 450K BeadChip data processing using subset quantile normalization for accurate DNA methylation estimation.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427494

Quantitative cross-validation and content analysis of the 450k DNA methylation array from Illumina, Inc.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427494

Make way for the 'next generation': application and prospects for genome-wide, epigenome-specific technologies in endocrine research

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427494

CpGassoc: an R function for analysis of DNA methylation microarray data

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427494

MethLAB: a graphical user interface package for the analysis of array-based DNA methylation data

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427494

Bump hunting to identify differentially methylated regions in epigenetic epidemiology studies.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427494

IMA: an R package for high-throughput analysis of Illumina's 450K Infinium methylation data

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427494

HumMeth27QCReport: an R package for quality control and primary analysis of Illumina Infinium methylation data

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427494

Batch effect correction for genome-wide methylation data with Illumina Infinium platform

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427494

Genome-wide DNA methylation profiling using Infinium® assay

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427494

The UCSC Genome Browser database: extensions and updates 2011.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427494

Validation of a DNA methylation microarray for 450,000 CpG sites in the human genome

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427494

Identification and validation of highly frequent CpG island hypermethylation in colorectal adenomas and carcinomas

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427494

Transcriptionally repressed genes become aberrantly methylated and distinguish tumors of different lineages in breast cancer.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427494

DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427494

Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427494

A global map of human gene expression

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427494

Age-dependent DNA methylation of genes that are suppressed in stem cells is a hallmark of cancer.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427494

lumi: a pipeline for processing Illumina microarray

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427494

Comprehensive high-throughput arrays for relative methylation (CHARM).

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427494

High density DNA methylation array with single CpG site resolution

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427494

Differential genome-wide array-based methylation profiles in prognostic subsets of chronic lymphocytic leukemia

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3427494

Evaluation of the Infinium Methylation 450K technology

17 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22936948

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.3389/FGENE.2012.00161

1 reference

18 October 2017

1 reference

PMC publication ID

3427494

18 October 2017

PubMed publication ID

22936948

1 reference

PMC publication ID

3427494