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Modelling prokaryote gene content
scientific article published on January 2006
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scholarly article
1 reference
stated in
Europe PubMed Central
PMC publication ID
2674660
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19455209%20AND%20SRC:MED&resulttype=core&format=json
retrieved
28 January 2020
title
Modelling prokaryote gene content
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
2674660
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19455209%20AND%20SRC:MED&resulttype=core&format=json
retrieved
28 January 2020
author
Andrew J. Roger
series ordinal
3
object named as
Andrew J Roger
1 reference
stated in
Europe PubMed Central
PMC publication ID
2674660
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19455209%20AND%20SRC:MED&resulttype=core&format=json
retrieved
28 January 2020
author name string
Matthew Spencer
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
2674660
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19455209%20AND%20SRC:MED&resulttype=core&format=json
retrieved
28 January 2020
Edward Susko
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
2674660
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19455209%20AND%20SRC:MED&resulttype=core&format=json
retrieved
28 January 2020
publication date
5 February 2007
1 reference
stated in
Europe PubMed Central
PMC publication ID
2674660
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19455209%20AND%20SRC:MED&resulttype=core&format=json
retrieved
28 January 2020
published in
Evolutionary Bioinformatics
1 reference
stated in
Europe PubMed Central
PMC publication ID
2674660
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19455209%20AND%20SRC:MED&resulttype=core&format=json
retrieved
28 January 2020
volume
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
2674660
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19455209%20AND%20SRC:MED&resulttype=core&format=json
retrieved
28 January 2020
page(s)
157-178
1 reference
stated in
Europe PubMed Central
PMC publication ID
2674660
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19455209%20AND%20SRC:MED&resulttype=core&format=json
retrieved
28 January 2020
cites work
Estimating the tempo and mode of gene family evolution from comparative genomic data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2674660
retrieved
26 October 2017
Weighted genome trees: refinements and applications
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2674660
retrieved
26 October 2017
Measuring genome conservation across taxa: divided strains and united kingdoms
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2674660
retrieved
26 October 2017
Gene family evolution: an in-depth theoretical and simulation analysis of non-linear birth-death-innovation models
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2674660
retrieved
26 October 2017
The ring of life provides evidence for a genome fusion origin of eukaryotes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2674660
retrieved
26 October 2017
Computational inference of scenarios for alpha-proteobacterial genome evolution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2674660
retrieved
26 October 2017
Comparative genomics of gene-family size in closely related bacteria
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2674660
retrieved
26 October 2017
Cladogenesis, coalescence and the evolution of the three domains of life
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2674660
retrieved
26 October 2017
Comparative genome analysis of Vibrio vulnificus, a marine pathogen
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2674660
retrieved
26 October 2017
Lateral gene transfer: when will adolescence end?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2674660
retrieved
26 October 2017
Lateral Gene Transfer and the Origins of Prokaryotic Groups
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2674660
retrieved
26 October 2017
Simple stochastic birth and death models of genome evolution: was there enough time for us to evolve?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2674660
retrieved
26 October 2017
The COG database: an updated version includes eukaryotes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2674660
retrieved
26 October 2017
The balance of driving forces during genome evolution in prokaryotes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2674660
retrieved
26 October 2017
Human and mouse genomic sequences reveal extensive breakpoint reuse in mammalian evolution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2674660
retrieved
26 October 2017
Retroids in archaea: phylogeny and lateral origins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2674660
retrieved
26 October 2017
Comparative genomics of Salmonella enterica serovar Typhi strains Ty2 and CT18
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2674660
retrieved
26 October 2017
Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and dominance of horizontal gene transfer in the evolution of prokaryotes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2674660
retrieved
26 October 2017
Birth and death of protein domains: a simple model of evolution explains power law behavior
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2674660
retrieved
26 October 2017
Genome trees and the tree of life
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2674660
retrieved
26 October 2017
Heterotachy, an important process of protein evolution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2674660
retrieved
26 October 2017
Genome trees constructed using five different approaches suggest new major bacterial clades
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2674660
retrieved
26 October 2017
Comparing genomes within the species Mycobacterium tuberculosis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2674660
retrieved
26 October 2017
Genome sequence of enterohaemorrhagic Escherichia coli O157:H7
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2674660
retrieved
26 October 2017
Evolutionary dynamics of full genome content in Escherichia coli
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2674660
retrieved
26 October 2017
Genome phylogeny based on gene content
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2674660
retrieved
26 October 2017
A genomic perspective on protein families
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2674660
retrieved
26 October 2017
Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2674660
retrieved
26 October 2017
Evolutionary trees from DNA sequences: A maximum likelihood approach
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2674660
retrieved
26 October 2017
Lengths of chromosomal segments conserved since divergence of man and mouse
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2674660
retrieved
26 October 2017
A nonhyperthermophilic common ancestor to extant life forms
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2674660
retrieved
29 May 2018
Maximum likelihood for genome phylogeny on gene content.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2674660
retrieved
17 August 2018
Gene duplication and biased functional retention of paralogs in bacterial genomes.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2674660
retrieved
17 August 2018
Patterns of bacterial gene movement
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2674660
retrieved
17 August 2018
Phylogenetic trees based on gene content
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2674660
retrieved
17 August 2018
Deriving the genomic tree of life in the presence of horizontal gene transfer: conditioned reconstruction
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2674660
retrieved
17 August 2018
MCMC genome rearrangement
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2674660
retrieved
17 August 2018
Bayesian gene/species tree reconciliation and orthology analysis using MCMC.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2674660
retrieved
17 August 2018
Inferring the root of a phylogenetic tree
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2674660
retrieved
17 August 2018
Appropriate likelihood ratio tests and marginal distributions for evolutionary tree models with constraints on parameters.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2674660
retrieved
17 August 2018
The frequency distribution of gene family sizes in complete genomes.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2674660
retrieved
17 August 2018
Estimating the pattern of nucleotide substitution
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/19455209
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Gene family content-based phylogeny of prokaryotes: the effect of criteria for inferring homology
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/19455209
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
SHOT: a web server for the construction of genome phylogenies
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/19455209
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Genome phylogenetic analysis based on extended gene contents
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/19455209
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Orthology, paralogy and proposed classification for paralog subtypes
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/19455209
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
PMC publication ID
2674660
1 reference
stated in
Europe PubMed Central
PMC publication ID
2674660
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19455209%20AND%20SRC:MED&resulttype=core&format=json
retrieved
28 January 2020
PubMed publication ID
19455209
1 reference
stated in
Europe PubMed Central
PMC publication ID
2674660
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19455209%20AND%20SRC:MED&resulttype=core&format=json
retrieved
28 January 2020
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