(Q42240842)

19 October 2017

viRome: an R package for the visualization and analysis of viral small RNA sequence datasets (English)

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19 October 2017

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1

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19 October 2017

3

Alain Kohl

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19 October 2017

Esther Schnettler

2

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PMCID

3712215

19 October 2017

language of work or name

English

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publication date

24 May 2013

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19 October 2017

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19 October 2017

29

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19 October 2017

15

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19 October 2017

1902-1903

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Creative Commons Attribution 3.0 Unported

19 October 2017

start time

2 October 2016

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April 2023 Public Data File from Crossref

copyright status

copyrighted

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describes a project that uses

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New Insights into Control of Arbovirus Replication and Spread by Insect RNA Interference Pathways

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712215

Dicer-2 processes diverse viral RNA species

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712215

RNA interference targets arbovirus replication in Culicoides cells

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712215

Tools for mapping high-throughput sequencing data

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712215

Arbovirus-derived piRNAs exhibit a ping-pong signature in mosquito cells

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712215

Production of virus-derived ping-pong-dependent piRNA-like small RNAs in the mosquito soma

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712215

In silico reconstruction of viral genomes from small RNAs improves virus-derived small interfering RNA profiling

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712215

Mosquito RNAi is the major innate immune pathway controlling arbovirus infection and transmission

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712215

Visitor, an informatic pipeline for analysis of viral siRNA sequencing datasets

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712215

Origins of alphavirus-derived small RNAs in mosquitoes

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712215

The Sequence Alignment/Map format and SAMtools

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712215

Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712215

Bioconductor: open software development for computational biology and bioinformatics

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712215

The small RNA profile during Drosophila melanogaster development

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712215

Identification of novel genes coding for small expressed RNAs

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712215

Role for a bidentate ribonuclease in the initiation step of RNA interference

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712215

RNAi: double-stranded RNA directs the ATP-dependent cleavage of mRNA at 21 to 23 nucleotide intervals

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712215

10.1093/BIOINFORMATICS/BTT297

26 October 2017

Identifiers

DOI

1 reference

journals/bioinformatics/WatsonSK13

19 October 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

19 October 2017

1 reference

PMCID

3712215