(Q42245163)

19 October 2017

An expanded binding model for Cys2His2 zinc finger protein-DNA interfaces (English)

1 reference

19 October 2017

Anton V Persikov

1

1 reference

PMC publication ID

3402046

19 October 2017

Mona Singh

series ordinal

2

1 reference

19 October 2017

13 May 2011

1 reference

19 October 2017

1 reference

19 October 2017

8

1 reference

19 October 2017

3

1 reference

19 October 2017

035010

1 reference

ZiFiT (Zinc Finger Targeter): an updated zinc finger engineering tool

19 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402046

The Pfam protein families database

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402046

Predicting DNA recognition by Cys2His2 zinc finger proteins

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402046

Zinc Finger Database (ZiFDB): a repository for information on C2H2 zinc fingers and engineered zinc-finger arrays

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402046

A probabilistic model of local sequence alignment that simplifies statistical significance estimation

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402046

Keep your fingers off my DNA: protein-protein interactions mediated by C2H2 zinc finger domains

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402046

Structure of the Wilms tumor suppressor protein zinc finger domain bound to DNA

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402046

Structure-based prediction of C2H2 zinc-finger binding specificity: sensitivity to docking geometry

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402046

Zinc Finger Tools: custom DNA-binding domains for transcription factors and nucleases

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402046

Ab initio prediction of transcription factor targets using structural knowledge

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402046

Improved profile HMM performance by assessment of critical algorithmic features in SAM and HMMER

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402046

Predicting specificity in bZIP coiled-coil protein interactions

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402046

TRANSFAC: transcriptional regulation, from patterns to profiles

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402046

Beyond the "recognition code": structures of two Cys2His2 zinc finger/TATA box complexes

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402046

Three classes of C2H2 zinc finger proteins

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402046

The Sequence of the Human Genome

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402046

DNA recognition by Cys2His2 zinc finger proteins

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402046

26 October 2017

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402046

Identification of DNA recognition sequences and protein interaction domains of the multiple-Zn-finger protein Roaz

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402046

Quantitative parameters for amino acid-base interaction: implications for prediction of protein-DNA binding sites

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402046

Differing roles for zinc fingers in DNA recognition: structure of a six-finger transcription factor IIIA complex

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402046

The solution structure of a specific GAGA factor-DNA complex reveals a modular binding mode

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402046

Cocrystal structure of YY1 bound to the adeno-associated virus P5 initiator

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402046

Zif268 protein-DNA complex refined at 1.6 A: a model system for understanding zinc finger-DNA interactions

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402046

A 2.2 A resolution crystal structure of a designed zinc finger protein bound to DNA

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402046

Crystal structure of a five-finger GLI-DNA complex: new perspectives on zinc fingers

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402046

Zinc finger phage: affinity selection of fingers with new DNA-binding specificities

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402046

DNA recognition code of transcription factors

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402046

Zinc finger-DNA recognition: crystal structure of a Zif268-DNA complex at 2.1 A

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402046

A structural taxonomy of DNA-binding domains

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402046

Context-dependent DNA recognition code for C2H2 zinc-finger transcription factors

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402046

Structure of Aart, a designed six-finger zinc finger peptide, bound to DNA.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402046

Weight matrices for protein-DNA binding sites from a single co-crystal structure

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402046

Probabilistic code for DNA recognition by proteins of the EGR family.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402046

Sequence-specific recognition of a repetitive DNA element by a C2H2 zinc-finger protein in Xenopus.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402046

Analysis of zinc fingers optimized via phage display: evaluating the utility of a recognition code

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402046

The role of stable complexes that repress and activate eucaryotic genes

3 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21572177

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Geometric analysis and comparison of protein-DNA interfaces: why is there no simple code for recognition?

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21572177

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1088/1478-3975/8/3/035010

1 reference

19 October 2017

1 reference

PMC publication ID

3402046

19 October 2017

PubMed publication ID

21572177

1 reference

PMC publication ID

3402046