(Q42254345)

19 October 2017

Characterization of the Burkholderia thailandensis SOS response by using whole-transcriptome shotgun sequencing (English)

1 reference

Burkholderia thailandensis

19 October 2017

0 references

0 references

7

Sina Bavari

1 reference

19 October 2017

Ricky L Ulrich

1

1 reference

19 October 2017

David Deshazer

2

1 reference

19 October 2017

Tara A Kenny

3

1 reference

19 October 2017

Melanie P Ulrich

4

1 reference

19 October 2017

Anna Moravusova

5

1 reference

19 October 2017

Timothy Opperman

6

1 reference

19 October 2017

Terry L Bowlin

8

1 reference

19 October 2017

Donald T Moir

9

1 reference

19 October 2017

Rekha G Panchal

10

1 reference

19 October 2017

language of work or name

English

0 references

publication date

19 July 2013

1 reference

Applied and Environmental Microbiology

19 October 2017

1 reference

19 October 2017

79

1 reference

19 October 2017

19

1 reference

19 October 2017

5830-5843

1 reference

describes a project that uses

19 October 2017

limma

1 reference

22 June 2022

https://europepmc.org/article/PMC/3811356

inferred from PubMed Central ID database lookup

cites work

Analysis of the SOS response of Vibrio and other bacteria with multiple chromosomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811356

Genomic acquisition of a capsular polysaccharide virulence cluster by non-pathogenic Burkholderia isolates

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811356

Genetic and phenotypic diversity in Burkholderia: contributions by prophage and phage-like elements

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811356

Statistical design and analysis of RNA sequencing data

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811356

SOS response induces persistence to fluoroquinolones in Escherichia coli

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811356

Estimating accuracy of RNA-Seq and microarrays with proteomics

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811356

The bacterial LexA transcriptional repressor.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811356

Aeons of distress: an evolutionary perspective on the bacterial SOS response.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811356

Type VI secretion is a major virulence determinant in Burkholderia mallei

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811356

Complete and SOS-mediated response of Staphylococcus aureus to the antibiotic ciprofloxacin

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811356

Lex marks the spot: the virulent side of SOS and a closer look at the LexA regulon

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811356

Defining the Pseudomonas aeruginosa SOS response and its role in the global response to the antibiotic ciprofloxacin

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811356

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811356

Inhibition of mutation and combating the evolution of antibiotic resistance

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811356

ATP-binding cassette transporters are targets for the development of antibacterial vaccines and therapies

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811356

Quorum quenching: enzymatic disruption of N-acylhomoserine lactone-mediated bacterial communication in Burkholderia thailandensis

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811356

Genomic diversity of Burkholderia pseudomallei clinical isolates: subtractive hybridization reveals a Burkholderia mallei-specific prophage in B. pseudomallei 1026b.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811356

Swarming populations ofSalmonella represent a unique physiological state coupled to multiple mechanisms of antibiotic resistance

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811356

Multilocus Sequence Typing and Evolutionary Relationships among the Causative Agents of Melioidosis and Glanders, Burkholderia pseudomallei and Burkholderia mallei

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811356

Swarm-Cell Differentiation in Salmonella enterica Serovar Typhimurium Results in Elevated Resistance to Multiple Antibiotics

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811356

Burkholderia thailandensis E125 harbors a temperate bacteriophage specific for Burkholderia mallei.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811356

The ABC of ABCS: a phylogenetic and functional classification of ABC systems in living organisms

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811356

ABC transporters: physiology, structure and mechanism--an overview

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811356

Identification of a Burkholderia mallei polysaccharide gene cluster by subtractive hybridization and demonstration that the encoded capsule is an essential virulence determinant

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811356

Comparative gene expression profiles following UV exposure in wild-type and SOS-deficient Escherichia coli

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811356

Identification of the acid phosphatase (acpA) gene homologues in pathogenic and non-pathogenic Burkholderia spp. facilitates TnphoA mutagenesis

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811356

The COG database: new developments in phylogenetic classification of proteins from complete genomes

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811356

Burkholderia thailandensis sp. nov., a Burkholderia pseudomallei-like species

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811356

A genomic perspective on protein families

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811356

Arabinose assimilation defines a nonvirulent biotype of Burkholderia pseudomallei

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811356

DNA gyrase, topoisomerase IV, and the 4-quinolones

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811356

Biochemical characteristics of clinical and environmental isolates of Burkholderia pseudomallei

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811356

The SOS regulatory system of Escherichia coli

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811356

SOS induction and autoregulation of the himA gene for site-specific recombination in Escherichia coli

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811356

Expression of the recA gene of Pseudomonas aeruginosa PAO is inducible by DNA-damaging agents

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811356

Mechanism of specific LexA cleavage: autodigestion and the role of RecA coprotease

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811356

Characterization of stress-responsive behavior in Pseudomonas aeruginosa PAO: isolation of Tn3-lacZYA fusions with novel damage-inducible (din) promoters

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811356

Identification of additional genes belonging to the LexA regulon in Escherichia coli

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811356

Mitomycin C induction of a temperate phage in Pseudomonas aeruginosa

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811356

Swarming motility: a multicellular behaviour conferring antimicrobial resistance

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811356

A compendium of antibiotic-induced transcription profiles reveals broad regulation of Pasteurella multocida virulence genes

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811356

Reconstruction of the evolutionary history of the LexA-binding sequence.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811356

Induction of Phage Formation in the Lysogenic Escherichia coli K-12 by Mitomycin C

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811356

Burkholderia pseudomallei virulence: definition, stability and association with clonality.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811356

THE EFFECT OF LYSOGENIC INDUCTION WITH MITOMYCIN C ON THE DEOXYRIBONUCLEIC ACID POLYMERASE OF ESCHERICHIA COLI K12-LAMBDA

17 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23872555

12 December 2020

inferred from PubMed ID database lookup

Synthesis of Deoxyribonucleic Acid by Phage-infected Escherichia coli in the Presence of Mitomycin C

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23872555

12 December 2020

inferred from PubMed ID database lookup

Characterization of the SOS response of Pseudomonas fluorescens strain DC206 using whole-genome transcript analysis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23872555

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1128/AEM.00538-13

1 reference

19 October 2017

1 reference

19 October 2017

PubMed publication ID

23872555

1 reference