(Q42333947)

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Functional Annotation of All Salmonid Genomes (FAASG): an international initiative supporting future salmonid research, conservation and aquaculture

scientific article published on 27 June 2017

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scholarly article

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Europe PubMed Central

27 October 2017

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Functional Annotation of All Salmonid Genomes (FAASG): an international initiative supporting future salmonid research, conservation and aquaculture (English)

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Europe PubMed Central

27 October 2017

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27 October 2017

object named as

Ben F Koop

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Louis Bernatchez

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object named as

Louis Bernatchez

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Europe PubMed Central

27 October 2017

Patricia M. Schulte

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object named as

Patricia M Schulte

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27 October 2017

Martin Montecino

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object named as

Martin Montecino

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Barbara F. Nowak

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object named as

Barbara F Nowak

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27 October 2017

Cristian Gallardo-Escárate

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object named as

Cristian Gallardo-Escárate

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27 October 2017

author name string

Daniel J Macqueen

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27 October 2017

Ross D Houston

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27 October 2017

Steinar Bergseth

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William S Davidson

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Tom Goldammer

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Yann Guiguen

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Patricia Iturra

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James W Kijas

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Sigbjørn Lien

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Alejandro Maass

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Samuel A M Martin

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Philip McGinnity

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Kerry A Naish

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Krista M Nichols

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Kristinn Ólafsson

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Stig W Omholt

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Yniv Palti

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Graham S Plastow

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Caird E Rexroad

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Matthew L Rise

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Rachael J Ritchie

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Simen R Sandve

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Alfredo Tello

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Rodrigo Vidal

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Jon Olav Vik

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Anna Wargelius

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José Manuel Yáñez

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FAASG Consortium

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publication date

27 June 2017

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27 October 2017

https://scigraph.springernature.com/pub.10.1186/s12864-017-3862-8

0 references

Genomic signatures among Oncorhynchus nerka ecotypes to inform conservation and management of endangered Sockeye Salmon

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488370

29 May 2018

Atlantic salmon populations reveal adaptive divergence of immune related genes - a duplicated genome under selection.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488370

29 May 2018

Genomic prediction of host resistance to sea lice in farmed Atlantic salmon populations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488370

29 May 2018

Evaluation of Genome-Enabled Selection for Bacterial Cold Water Disease Resistance Using Progeny Performance Data in Rainbow Trout: Insights on Genotyping Methods and Genomic Prediction Models

1 reference

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29 May 2018

Development of an Efficient Genome Editing Method by CRISPR/Cas9 in a Fish Cell Line.

1 reference

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29 May 2018

The Atlantic salmon genome provides insights into rediploidization

1 reference

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29 May 2018

Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding

1 reference

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29 May 2018

The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons

1 reference

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29 May 2018

Dnd knockout ablates germ cells and demonstrates germ cell independent sex differentiation in Atlantic salmon

1 reference

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29 May 2018

First in-depth analysis of the novel Th2-type cytokines in salmonid fish reveals distinct patterns of expression and modulation but overlapping bioactivities

1 reference

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29 May 2018

Effectiveness of managed gene flow in reducing genetic divergence associated with captive breeding.

1 reference

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29 May 2018

The vgll3 Locus Controls Age at Maturity in Wild and Domesticated Atlantic Salmon (Salmo salar L.) Males

1 reference

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29 May 2018

Sex-dependent dominance at a single locus maintains variation in age at maturity in salmon

1 reference

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29 May 2018

Common garden experiments in the genomic era: new perspectives and opportunities

1 reference

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29 May 2018

ChIPmentation: fast, robust, low-input ChIP-seq for histones and transcription factors.

1 reference

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29 May 2018

Potential of promotion of alleles by genome editing to improve quantitative traits in livestock breeding programs.

1 reference

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29 May 2018

Epithelial Cadherin Determines Resistance to Infectious Pancreatic Necrosis Virus in Atlantic Salmon.

1 reference

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29 May 2018

Mapping and validation of a major QTL affecting resistance to pancreas disease (salmonid alphavirus) in Atlantic salmon (Salmo salar).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488370

29 May 2018

Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488370

29 May 2018

Functional divergence of type 2 deiodinase paralogs in the Atlantic salmon.

1 reference

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29 May 2018

Genome-wide association study (GWAS) for growth rate and age at sexual maturation in Atlantic salmon (Salmo salar)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488370

29 May 2018

Special Issue: Evolutionary perspectives on salmonid conservation and management

1 reference

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29 May 2018

European sea bass genome and its variation provide insights into adaptation to euryhalinity and speciation

1 reference

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29 May 2018

A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping

1 reference

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29 May 2018

Genomic prediction in an admixed population of Atlantic salmon (Salmo salar).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488370

29 May 2018

Chemokine receptors in Atlantic salmon

1 reference

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29 May 2018

Targeted mutagenesis in Atlantic salmon (Salmo salar L.) using the CRISPR/Cas9 system induces complete knockout individuals in the F0 generation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488370

29 May 2018

Comparative analysis of metazoan chromatin organization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488370

29 May 2018

The genome and linkage map of the northern pike (Esox lucius): conserved synteny revealed between the salmonid sister group and the Neoteleostei

1 reference

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29 May 2018

Genomic organization and evolution of the trace amine-associated receptor (TAAR) repertoire in Atlantic salmon (Salmo salar)

1 reference

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29 May 2018

The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates

1 reference

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29 May 2018

Development and validation of a high density SNP genotyping array for Atlantic salmon (Salmo salar).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488370

29 May 2018

A well-constrained estimate for the timing of the salmonid whole genome duplication reveals major decoupling from species diversification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488370

29 May 2018

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488370

29 May 2018

Detection of quantitative trait loci (QTL) related to grilsing and late sexual maturation in Atlantic salmon (Salmo salar).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488370

29 May 2018

Evaluating adaptive divergence between migratory and nonmigratory ecotypes of a salmonid fish, Oncorhynchus mykiss

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488370

29 May 2018

The zebrafish reference genome sequence and its relationship to the human genome

1 reference

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29 May 2018

Analysis of RNA base modification and structural rearrangement by single-molecule real-time detection of reverse transcription

1 reference

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29 May 2018

On the immortality of television sets: "function" in the human genome according to the evolution-free gospel of ENCODE

1 reference

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29 May 2018

Evolution of ancient functions in the vertebrate insulin-like growth factor system uncovered by study of duplicated salmonid fish genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488370

29 May 2018

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488370

29 May 2018

The accessible chromatin landscape of the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488370

29 May 2018

An integrated encyclopedia of DNA elements in the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488370

29 May 2018

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1 reference

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29 May 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488370

29 May 2018

Conserved role of intragenic DNA methylation in regulating alternative promoters

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488370

29 May 2018

Population diversity and the portfolio effect in an exploited species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488370

29 May 2018

On the origin of species: insights from the ecological genomics of lake whitefish

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488370

29 May 2018

Transcriptome analysis by strand-specific sequencing of complementary DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488370

29 May 2018

Reduced representation bisulfite sequencing for comparative high-resolution DNA methylation analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488370

29 May 2018

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1 reference

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29 May 2018

Fitness reduction and potential extinction of wild populations of Atlantic salmon, Salmo salar, as a result of interactions with escaped farm salmon.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488370

16 June 2018

Genetic basis of adult migration timing in anadromous steelhead discovered through multivariate association testing.

1 reference

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17 August 2018

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1 reference

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17 August 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488370

17 August 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488370

17 August 2018

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1 reference

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17 August 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488370

17 August 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488370

17 August 2018

An immune-related gene evolved into the master sex-determining gene in rainbow trout, Oncorhynchus mykiss.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488370

17 August 2018

Impact of naturally spawning captive-bred Atlantic salmon on wild populations: depressed recruitment and increased risk of climate-mediated extinction.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5488370

17 August 2018

Invasive hybridization in a threatened species is accelerated by climate change

1 reference

https://api.crossref.org/works/10.1186%2FS12864-017-3862-8

21 January 2018

Identifiers

10.1186/S12864-017-3862-8

1 reference

Europe PubMed Central

27 October 2017

Dimensions Publication ID

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/s12864-017-3862-8

1 reference

Europe PubMed Central

27 October 2017

1 reference

Europe PubMed Central

27 October 2017

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