(Q42409445)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20886965%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

title

Analysis of a DNA simulation model through hairpin melting experiments (English)

1 reference

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14 February 2020

2

1 reference

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14 February 2020

author name string

Margaret C Linak

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20886965%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

language of work or name

English

0 references

publication date

1 September 2010

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20886965%20AND%20SRC:MED&resulttype=core&format=json

Journal of Chemical Physics

14 February 2020

published in

1 reference

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14 February 2020

volume

133

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20886965%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

issue

12

1 reference

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14 February 2020

page(s)

125101

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20886965%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955729

Coarse-Grained Brownian Dynamics Simulations of the 10-23 DNAzyme.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955729

Uncovering pathways in DNA oligonucleotide hybridization via transition state analysis

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955729

Recent advances in the study of nucleic acid flexibility by molecular dynamics

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955729

Computer simulation study of molecular recognition in model DNA microarrays

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955729

Mesoscopic modeling for nucleic acid chain dynamics.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955729

Ion motions in molecular dynamics simulations on DNA.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955729

Mfold web server for nucleic acid folding and hybridization prediction

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955729

Human telomeric DNA: G-quadruplex, i-motif and Watson-Crick double helix

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955729

Molecular dynamics applied to nucleic acids

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955729

Molecular dynamics simulation of nucleic acids: successes, limitations, and promise

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955729

From atomic to mesoscopic descriptions of the internal dynamics of DNA.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955729

28 May 2018

Cleaving DNA with DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955729

A general purpose RNA-cleaving DNA enzyme

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955729

Product differentiation by analysis of DNA melting curves during the polymerase chain reaction

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955729

DNA nanotweezers studied with a coarse-grained model of DNA.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955729

The effect of hydrodynamic interactions on the dynamics of DNA translocation through pores.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955729

A coarse grain model for DNA.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955729

Brownian dynamics simulations of sequence-dependent duplex denaturation in dynamically superhelical DNA.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955729

MD simulations of homomorphous PNA, DNA, and RNA single strands: characterization and comparison of conformations and dynamics

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955729

Simple model for the DNA denaturation transition.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955729

A systematically coarse-grained model for DNA and its predictions for persistence length, stacking, twist, and chirality

16 August 2018

1 reference

12 December 2020

Computer simulation of DNA double-helix dynamics

1 reference

12 December 2020

Roles of stiffness and excluded volume in DNA denaturation

1 reference

12 December 2020

Model simulations of DNA dynamics

1 reference

12 December 2020

Dynamics of DNA oligomers

1 reference

12 December 2020

Brownian dynamics simulations of single-stranded DNA hairpins

1 reference

12 December 2020

A coarse-grained model for double-helix molecules in solution: spontaneous helix formation and equilibrium properties

1 reference

12 December 2020

The impact of monovalent ion force field model in nucleic acids simulations

1 reference

12 December 2020

Dynamical scaling of the DNA unzipping transition

1 reference

12 December 2020

Modeling DNA structure, elasticity, and deformations at the base-pair level

1 reference

12 December 2020

DNA melting analysis for detection of single nucleotide polymorphisms

1 reference

12 December 2020

Identifiers

DOI

10.1063/1.3480685

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20886965%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20886965%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

PubMed publication ID

20886965

1 reference