(Q42433677)

31 October 2017

Rosette iron deficiency transcript and microRNA profiling reveals links between copper and iron homeostasis in Arabidopsis thaliana (English)

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31 October 2017

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Brian M Waters

1

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author name string

Samuel A McInturf

series ordinal

2

1 reference

PMCID

3467300

31 October 2017

Ricardo J Stein

series ordinal

3

1 reference

31 October 2017

7 September 2012

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Journal of Experimental Botany

31 October 2017

1 reference

31 October 2017

63

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31 October 2017

16

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31 October 2017

5903-5918

1 reference

PMCID

3467300

describes a project that uses

31 October 2017

Cytoscape

1 reference

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

inferred from PubMed Central ID database lookup

limma

1 reference

22 June 2022

https://europepmc.org/article/PMC/3467300

inferred from PubMed Central ID database lookup

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Vacuolar nicotianamine has critical and distinct roles under iron deficiency and for zinc sequestration in Arabidopsis.

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Use of natural variation reveals core genes in the transcriptome of iron-deficient Arabidopsis thaliana roots.

28 May 2018

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Conservation and diversity of microRNA-associated copper-regulatory networks in Populus trichocarpa

28 May 2018

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28 May 2018

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Transcriptome analysis by GeneTrail revealed regulation of functional categories in response to alterations of iron homeostasis in Arabidopsis thaliana

28 May 2018

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MiR398 and plant stress responses

28 May 2018

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Signaling network in sensing phosphate availability in plants

28 May 2018

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The biogenesis and physiological function of chloroplast superoxide dismutases

28 May 2018

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Reactive oxygen species and antioxidant machinery in abiotic stress tolerance in crop plants

28 May 2018

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The bHLH transcription factor POPEYE regulates response to iron deficiency in Arabidopsis roots

28 May 2018

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Natural variation of transcriptional auxin response networks in Arabidopsis thaliana

28 May 2018

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Phloem small RNAs, nutrient stress responses, and systemic mobility

28 May 2018

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Exploring genetic and expression differences between physiologically extreme ecotypes: comparative genomic hybridization and gene expression studies of Kas-1 and Tsu-1 accessions of Arabidopsis thaliana.

28 May 2018

1 reference

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microRNA-directed cleavage and translational repression of the copper chaperone for superoxide dismutase mRNA in Arabidopsis.

28 May 2018

1 reference

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Physiological functions of mineral micronutrients (Cu, Zn, Mn, Fe, Ni, Mo, B, Cl).

28 May 2018

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28 May 2018

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Early iron-deficiency-induced transcriptional changes in Arabidopsis roots as revealed by microarray analyses

28 May 2018

1 reference

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SQUAMOSA Promoter Binding Protein-Like7 Is a Central Regulator for Copper Homeostasis in Arabidopsis

28 May 2018

1 reference

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Quantitative genomics: analyzing intraspecific variation using global gene expression polymorphisms or eQTLs.

28 May 2018

1 reference

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MicroRNA-mediated systemic down-regulation of copper protein expression in response to low copper availability in Arabidopsis

28 May 2018

1 reference

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Regulation of copper homeostasis by micro-RNA in Arabidopsis

28 May 2018

1 reference

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Copper and iron homeostasis in Arabidopsis: responses to metal deficiencies, interactions and biotechnological applications

28 May 2018

1 reference

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Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis is mediated by downregulation of miR398 and important for oxidative stress tolerance

28 May 2018

1 reference

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Real-time quantification of microRNAs by stem-loop RT-PCR

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467300

Mobilization of vacuolar iron by AtNRAMP3 and AtNRAMP4 is essential for seed germination on low iron.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467300

Genomic survey of gene expression diversity in Arabidopsis thaliana.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467300

The essential basic helix-loop-helix protein FIT1 is required for the iron deficiency response

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467300

Computational identification of plant microRNAs and their targets, including a stress-induced miRNA

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467300

Expression profiles of Arabidopsis thaliana in mineral deficiencies reveal novel transporters involved in metal homeostasis.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467300

Mapping and analysis of quantitative trait loci in experimental populations

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467300

Fe sparing and Fe recycling contribute to increased superoxide dismutase capacity in iron-starved Chlamydomonas reinhardtii

28 May 2018

1 reference

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Transcriptome sequencing identifies SPL7-regulated copper acquisition genes FRO4/FRO5 and the copper dependence of iron homeostasis in Arabidopsis.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467300

Ethylene and nitric oxide involvement in the up-regulation of key genes related to iron acquisition and homeostasis in Arabidopsis

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467300

MicroRNA expression profile in common bean (Phaseolus vulgaris) under nutrient deficiency stresses and manganese toxicity

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467300

TAPIR, a web server for the prediction of plant microRNA targets, including target mimics.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467300

Cell identity mediates the response of Arabidopsis roots to abiotic stress.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467300

FIT interacts with AtbHLH38 and AtbHLH39 in regulating iron uptake gene expression for iron homeostasis in Arabidopsis

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467300

Natural variation in RPS2-mediated resistance among Arabidopsis accessions: correlation between gene expression profiles and phenotypic responses.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467300

Whole-plant mineral partitioning throughout the life cycle in Arabidopsis thaliana ecotypes Columbia, Landsberg erecta, Cape Verde Islands, and the mutant line ysl1ysl3.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467300

Natural variation among Arabidopsis thaliana accessions for transcriptome response to exogenous salicylic acid

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467300

Biosynthesis and secretion of mugineic acid family phytosiderophores in zinc-deficient barley.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467300

Limiting Factors in Photosynthesis: IV. Iron Stress-Mediated Changes in Light-Harvesting and Electron Transport Capacity and its Effects on Photosynthesis in Vivo

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467300

Limiting Factors in Photosynthesis: II. IRON STRESS DIMINISHES PHOTOCHEMICAL CAPACITY BY REDUCING THE NUMBER OF PHOTOSYNTHETIC UNITS.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467300

Limiting Factors in Photosynthesis: I. USE OF IRON STRESS TO CONTROL PHOTOCHEMICAL CAPACITY IN VIVO.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467300

Expression profiling of the Arabidopsis ferric chelate reductase (FRO) gene family reveals differential regulation by iron and copper

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467300

A copper chaperone for superoxide dismutase that confers three types of copper/zinc superoxide dismutase activity in Arabidopsis.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467300

Molecular and biochemical characterization of the Fe(III) chelate reductase gene family in Arabidopsis thaliana

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467300

Identification of a copper transporter family in Arabidopsis thaliana.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467300

Response of Arabidopsis to iron deficiency stress as revealed by microarray analysis.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467300

Improving the thiobarbituric acid-reactive-substances assay for estimating lipid peroxidation in plant tissues containing anthocyanin and other interfering compounds

16 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FJXB%2FERS239

Iron deficiency-mediated stress regulation of four subgroup Ib BHLH genes in Arabidopsis thaliana

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FJXB%2FERS239

Induction of the Root Cell Plasma Membrane Ferric Reductase (An Exclusive Role for Fe and Cu)

21 January 2018

1 reference

12 December 2020

Mutations in Arabidopsis yellow stripe-like1 and yellow stripe-like3 reveal their roles in metal ion homeostasis and loading of metal ions in seeds

1 reference

12 December 2020

The Arabidopsis AtOPT3 protein functions in metal homeostasis and movement of iron to developing seeds

1 reference

12 December 2020

Ferritins control interaction between iron homeostasis and oxidative stress in Arabidopsis

1 reference

12 December 2020

Gene expression profiling analysis of copper homeostasis in Arabidopsis thaliana

1 reference

12 December 2020

Transcriptional profiling of the Arabidopsis iron deficiency response reveals conserved transition metal homeostasis networks

1 reference

12 December 2020

Commentary to: "Improving the thiobarbituric acid-reactive-substances assay for estimating lipid peroxidation in plant tissues containing anthocyanin and other interfering compounds" by Hodges et al., Planta (1999) 207:604-611

1 reference

12 December 2020

A metal-accumulator mutant of Arabidopsis thaliana

1 reference

12 December 2020

Identifiers

DOI

10.1093/JXB/ERS239

1 reference

31 October 2017

1 reference

31 October 2017

1 reference

PMCID

3467300