(Q42509430)

1 November 2017

Highly conserved low-copy nuclear genes as effective markers for phylogenetic analyses in angiosperms (English)

1 reference

1 November 2017

1 reference

0 references

Ning Zhang

1

1 reference

1 November 2017

Liping Zeng

series ordinal

2

1 reference

1 November 2017

Hongyan Shan

series ordinal

3

1 reference

1 November 2017

Hong Ma

series ordinal

4

1 reference

1 November 2017

language of work or name

English

0 references

publication date

11 July 2012

1 reference

1 November 2017

1 reference

1 November 2017

195

1 reference

1 November 2017

4

1 reference

1 November 2017

923-937

1 reference

Ribosomal ITS sequences and plant phylogenetic inference

1 November 2017

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Incomplete homogenization of 18 S ribosomal DNA coding regions in Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Phylogenetic utility of the internal transcribed spacers of nuclear ribosomal DNA in plants: an example from the compositae

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

The its Region of Nuclear Ribosomal DNA: A Valuable Source of Evidence on Angiosperm Phylogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Dated molecular phylogenies indicate a Miocene origin for Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

The age and diversification of the angiosperms re-revisited

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

The inheritance of genes in mitochondria and chloroplasts: laws, mechanisms, and models

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Phylogenetics of asterids based on 3 coding and 3 non-coding chloroplast DNA markers and the utility of non-coding DNA at higher taxonomic levels

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Phylogenetics of Seed Plants: An Analysis of Nucleotide Sequences from the Plastid Gene rbcL

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Rates and patterns of chloroplast DNA evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Molecular phylogeny of Scorzoneroides (Asteraceae): evolution of heterocarpy and annual habit in unpredictable environments

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

A Phylogeny of the Monocots, as Inferred from rbcL and atpA Sequence Variation, and a Comparison of Methods for Calculating Jackknife and Bootstrap Values

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Two rounds of whole genome duplication in the ancestral vertebrate

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

BEAST: Bayesian evolutionary analysis by sampling trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

HaMStR: profile hidden markov model based search for orthologs in ESTs

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

MUSCLE: multiple sequence alignment with high accuracy and high throughput

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Reconstructing the ancestral angiosperm flower and its initial specializations

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Multigene phylogeny of the green lineage reveals the origin and diversification of land plants.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Eukaryotic MCM proteins: beyond replication initiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Identification, analysis, and utilization of conserved ortholog set markers for comparative genomics in higher plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Phylogenetic utility of the nuclear gene arginine decarboxylase: an example from Brassicaceae

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Analysis of the Amborella trichopoda chloroplast genome sequence suggests that amborella is not a basal angiosperm.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Removal of noisy characters from chloroplast genome-scale data suggests revision of phylogenetic placements of Amborella and Ceratophyllum

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Paternal, maternal, and biparental inheritance of the chloroplast genome in Passiflora (Passifloraceae): implications for phylogenetic studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Biological identifications through DNA barcodes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Angiosperm phylogeny based on matK sequence information

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Dense taxonomic EST sampling and its applications for molecular systematics of the Coleoptera (beetles).

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Reconstructing the early evolution of Fungi using a six-gene phylogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Ancestral polyploidy in seed plants and angiosperms

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Horizontal gene transfer in eukaryotic evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

The mitochondrial DNA of land plants: peculiarities in phylogenetic perspective

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Phylogenomics reveals deep molluscan relationships

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Orthologs, paralogs, and evolutionary genomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Use of DNA barcodes to identify flowering plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

DNA barcoding the floras of biodiversity hotspots

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

A functional phylogenomic view of the seed plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Potential pitfalls of modelling ribosomal RNA data in phylogenetic tree reconstruction: evidence from case studies in the Metazoa

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Comparative analysis of a large dataset indicates that internal transcribed spacer (ITS) should be incorporated into the core barcode for seed plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Molecular phylogeny of Cypripedium (Orchidaceae: Cypripedioideae) inferred from multiple nuclear and chloroplast regions

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Origins and evolution of the recA/RAD51 gene family: evidence for ancient gene duplication and endosymbiotic gene transfer

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

The origins and early evolution of DNA mismatch repair genes--multiple horizontal gene transfers and co-evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Reticulate evolution, cryptic species, and character convergence in the core East Asian clade of Gaultheria (Ericaceae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

The Root of Angiosperm Phylogeny Inferred from Duplicate Phytochrome Genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Phylogeny of the ants: diversification in the age of angiosperms

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

The Continuing Search: Low-Copy Nuclear Sequences for Lower-Level Plant Molecular Phylogenetic Studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Reconciling gene and genome duplication events: using multiple nuclear gene families to infer the phylogeny of the aquatic plant family Pontederiaceae.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

MODELTEST: testing the model of DNA substitution

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

The earliest angiosperms: evidence from mitochondrial, plastid and nuclear genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Reconstructing the Basal Angiosperm Phylogeny: Evaluating Information Content of Mitochondrial Genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Angiosperm phylogeny inferred from sequences of four mitochondrial genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Genome-scale approaches to resolving incongruence in molecular phylogenies

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

MrBayes 3: Bayesian phylogenetic inference under mixed models

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Utility of low-copy nuclear gene sequences in plant phylogenetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Evolution of alcohol dehydrogenase genes in peonies (Paeonia): phylogenetic relationships of putative nonhybrid species

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Genome sequence of the palaeopolyploid soybean

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

CONSEL: for assessing the confidence of phylogenetic tree selection

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

The genome of woodland strawberry (Fragaria vesca)

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Resolving the evolutionary relationships of molluscs with phylogenomic tools

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Polyploidy and angiosperm diversification

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Angiosperm phylogeny: 17 genes, 640 taxa

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

The role of phylogenetics in comparative genetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Rate heterogeneity among lineages of tracheophytes: integration of molecular and fossil data and evidence for molecular living fossils

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Nuclear DNA-based markers for plant evolutionary biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Phylogenomic analyses unravel annelid evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Rosid radiation and the rapid rise of angiosperm-dominated forests

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Generating single-copy nuclear gene data for a recent adaptive radiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Evolution of the angiosperms: calibrating the family tree

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Combining bioinformatics and phylogenetics to identify large sets of single-copy orthologous genes (COSII) for comparative, evolutionary and systematic studies: a test case in the euasterid plant clade

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

The root of the angiosperms revisited

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Evolution by gene duplication: an update

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Phylogenetic detection of numerous gene duplications shared by animals, fungi and plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Mitochondrial matR sequences help to resolve deep phylogenetic relationships in rosids

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Evolution of the RNA-dependent RNA polymerase (RdRP) genes: duplications and possible losses before and after the divergence of major eukaryotic groups

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

Loss of photosynthetic and chlororespiratory genes from the plastid genome of a parasitic flowering plant

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2012.04212.X

10.1111/J.1469-8137.2012.04212.X

21 January 2018

Identifiers

DOI

1 reference

1 November 2017

1 reference