(Q42594100)

English

ARTADE2DB: improved statistical inferences for Arabidopsis gene functions and structure predictions by dynamic structure-based dynamic expression (DSDE) analyses

scientific article published on 12 January 2011

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scholarly article

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Europe PubMed Central

PMC publication ID

3 November 2017

ARTADE2DB: improved statistical inferences for Arabidopsis gene functions and structure predictions by dynamic structure-based dynamic expression (DSDE) analyses (English)

1 reference

Europe PubMed Central

PMC publication ID

3 November 2017

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Masanori Okamoto

9

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Europe PubMed Central

PMC publication ID

3 November 2017

Norio Kobayashi

3

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Norio Kobayashi

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Europe PubMed Central

PMC publication ID

3 November 2017

author name string

Kei Iida

1

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Europe PubMed Central

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3 November 2017

Shuji Kawaguchi

2

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Europe PubMed Central

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3 November 2017

Yuko Yoshida

4

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Europe PubMed Central

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3 November 2017

Manabu Ishii

5

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Europe PubMed Central

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3 November 2017

Erimi Harada

6

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Europe PubMed Central

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3 November 2017

Kousuke Hanada

7

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Europe PubMed Central

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3 November 2017

Akihiro Matsui

8

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Europe PubMed Central

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3 November 2017

Junko Ishida

10

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Europe PubMed Central

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3 November 2017

Maho Tanaka

11

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Europe PubMed Central

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3 November 2017

Taeko Morosawa

12

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Europe PubMed Central

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3 November 2017

Motoaki Seki

13

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Europe PubMed Central

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3 November 2017

Tetsuro Toyoda

14

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3 November 2017

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publication date

12 January 2011

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3 November 2017

number of pages

11

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Plant and Cell Physiology

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Europe PubMed Central

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3 November 2017

52

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3 November 2017

2

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3 November 2017

254-264

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Europe PubMed Central

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3 November 2017

The Pfam protein families database

1 reference

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28 May 2018

A conserved transcriptional regulator is required for RNA-directed DNA methylation and plant development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037080

28 May 2018

Genome-wide mapping of alternative splicing in Arabidopsis thaliana

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28 May 2018

PosMed-plus: an intelligent search engine that inferentially integrates cross-species information resources for molecular breeding of plants

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28 May 2018

Phenome analysis in plant species using loss-of-function and gain-of-function mutants

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PosMed (Positional Medline): prioritizing genes with an artificial neural network comprising medical documents to accelerate positional cloning

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28 May 2018

ATTED-II provides coexpressed gene networks for Arabidopsis

1 reference

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28 May 2018

Arabidopsis transcriptome analysis under drought, cold, high-salinity and ABA treatment conditions using a tiling array

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28 May 2018

CressExpress: a tool for large-scale mining of expression data from Arabidopsis

1 reference

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28 May 2018

Highly integrated single-base resolution maps of the epigenome in Arabidopsis

1 reference

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28 May 2018

Statistical search on the Semantic Web.

1 reference

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28 May 2018

The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations

1 reference

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28 May 2018

miRBase: tools for microRNA genomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037080

28 May 2018

The Arabidopsis Information Resource (TAIR): gene structure and function annotation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037080

28 May 2018

Improved detection of overrepresentation of Gene-Ontology annotations with parent child analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037080

28 May 2018

NMPP: a user-customized NimbleGen microarray data processing pipeline

1 reference

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28 May 2018

Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037080

28 May 2018

Improved scoring of functional groups from gene expression data by decorrelating GO graph structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037080

28 May 2018

Survey of conserved alternative splicing events of mRNAs encoding SR proteins in land plants.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037080

28 May 2018

Tiling array-driven elucidation of transcriptional structures based on maximum-likelihood and Markov models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037080

28 May 2018

RARGE: a large-scale database of RIKEN Arabidopsis resources ranging from transcriptome to phenome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037080

28 May 2018

Arabidopsis micro-RNA biogenesis through Dicer-like 1 protein functions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037080

28 May 2018

Empirical analysis of transcriptional activity in the Arabidopsis genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037080

28 May 2018

Predicting gene function by conserved co-expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037080

28 May 2018

Plant snoRNA database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037080

28 May 2018

Functional annotation of a full-length Arabidopsis cDNA collection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037080

28 May 2018

Publishing on the semantic web

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28 May 2018

Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection

1 reference

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28 May 2018

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037080

28 May 2018

Gene ontology: tool for the unification of biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037080

28 May 2018

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037080

28 May 2018

Genome-wide analysis of endogenous abscisic acid-mediated transcription in dry and imbibed seeds of Arabidopsis using tiling arrays

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037080

16 August 2018

Arabidopsis decapping 5 is required for mRNA decapping, P-body formation, and translational repression during postembryonic development.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037080

16 August 2018

An inositolphosphorylceramide synthase is involved in regulation of plant programmed cell death associated with defense in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037080

16 August 2018

Identifiers

10.1093/PCP/PCQ202

1 reference

Europe PubMed Central

PMC publication ID

3 November 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

3 November 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

3 November 2017

ResearchGate publication ID

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