(Q42601195)

English

CodABC: a computational framework to coestimate recombination, substitution, and molecular adaptation rates by approximate Bayesian computation

scientific article published on 9 January 2015

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

3 November 2017

CodABC: a computational framework to coestimate recombination, substitution, and molecular adaptation rates by approximate Bayesian computation (English)

1 reference

Europe PubMed Central

PMC publication ID

3 November 2017

software framework

1 reference

based on heuristic

inferred from title

1

1 reference

Europe PubMed Central

PMC publication ID

3 November 2017

2

1 reference

Europe PubMed Central

PMC publication ID

3 November 2017

4

1 reference

Europe PubMed Central

PMC publication ID

3 November 2017

Mark A Beaumont

object named as

Mark A Beaumont

3

0 references

publication date

9 January 2015

1 reference

Europe PubMed Central

PMC publication ID

3 November 2017

Molecular Biology and Evolution

1 reference

Europe PubMed Central

PMC publication ID

3 November 2017

32

1 reference

Europe PubMed Central

PMC publication ID

3 November 2017

4

1 reference

Europe PubMed Central

PMC publication ID

3 November 2017

1109-1112

1 reference

Europe PubMed Central

PMC publication ID

3 November 2017

Simulation of genome-wide evolution under heterogeneous substitution models and complex multispecies coalescent histories

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379410

28 May 2018

Coestimation of recombination, substitution and molecular adaptation rates by approximate Bayesian computation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379410

28 May 2018

The genomic basis of adaptive evolution in threespine sticklebacks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379410

28 May 2018

Emergence of a new HIV type 1 CRF01_AE variant in Guangxi, Southern China

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379410

28 May 2018

Approximate Bayesian Computation (ABC) in practice.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379410

28 May 2018

Coalescent simulation of intracodon recombination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379410

28 May 2018

Genome evolution and adaptation in a long-term experiment with Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379410

28 May 2018

In defense of statistical methods for detecting positive selection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379410

28 May 2018

Ethnic differences in the adaptation rate of HIV gp120 from a vaccine trial

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379410

28 May 2018

Investigating protein-coding sequence evolution with probabilistic codon substitution models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379410

28 May 2018

Mapping protease inhibitor resistance to human immunodeficiency virus type 1 sequence polymorphisms within patients.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379410

28 May 2018

A simple and robust statistical test for detecting the presence of recombination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379410

28 May 2018

Recombination estimation under complex evolutionary models with the coalescent composite-likelihood method

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379410

28 May 2018

Estimating diversifying selection and functional constraint in the presence of recombination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379410

28 May 2018

Molecular signatures of natural selection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379410

28 May 2018

Site-to-site variation of synonymous substitution rates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379410

28 May 2018

Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379410

28 May 2018

Estimating recombination rates from population-genetic data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379410

28 May 2018

Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379410

28 May 2018

Approximate Bayesian computation in population genetics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379410

28 May 2018

Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379410

28 May 2018

A program for calculating and displaying compatibility matrices as an aid in determining reticulate evolution in molecular sequences.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379410

28 May 2018

A codon-based model of nucleotide substitution for protein-coding DNA sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379410

28 May 2018

Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379410

28 May 2018

Lower in vivo mutation rate of human immunodeficiency virus type 1 than that predicted from the fidelity of purified reverse transcriptase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379410

28 May 2018

Analyzing the mosaic structure of genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379410

28 May 2018

Quasispecies variant dynamics during emergence of resistance to raltegravir in HIV-1-infected patients

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379410

16 August 2018

Molecular analysis of gp41 sequences of HIV type 1 subtype C from India

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379410

16 August 2018

Approximate Bayesian Computation in Evolution and Ecology

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU411

21 January 2018

Non-linear regression models for Approximate Bayesian Computation

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU411

21 January 2018

abc: an R package for approximate Bayesian computation (ABC)

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU411

21 January 2018

Recombination in HIV-1

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU411

21 January 2018

Potential impact of recombination on sitewise approaches for detecting positive natural selection

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU411

21 January 2018

Identifiers

10.1093/MOLBEV/MSU411

1 reference

Europe PubMed Central

PMC publication ID

3 November 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

3 November 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

3 November 2017

ResearchGate publication ID

0 references

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