(Q42620789)

English

Strand opening-deficient Escherichia coli RNA polymerase facilitates investigation of closed complexes with promoter DNA: effects of DNA sequence and temperature

scientific article published on 16 May 2007

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scholarly article

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Europe PubMed Central

3 November 2017

Strand opening-deficient Escherichia coli RNA polymerase facilitates investigation of closed complexes with promoter DNA: effects of DNA sequence and temperature (English)

1 reference

Europe PubMed Central

3 November 2017

Escherichia coli

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based on heuristic

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author name string

Victoria M Cook

1

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Europe PubMed Central

3 November 2017

Pieter L Dehaseth

2

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Europe PubMed Central

3 November 2017

language of work or name

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publication date

16 May 2007

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Europe PubMed Central

3 November 2017

number of pages

8

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Journal of Biological Chemistry

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Europe PubMed Central

3 November 2017

282

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Europe PubMed Central

3 November 2017

29

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Europe PubMed Central

3 November 2017

21319-21326

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Europe PubMed Central

3 November 2017

The functional and regulatory roles of sigma factors in transcription

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M702232200

21 January 2018

Kinetic studies and structural models of the association of E. coli sigma(70) RNA polymerase with the lambdaP(R) promoter: large scale conformational changes in forming the kinetically significant intermediates

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M702232200

21 January 2018

DNA footprints of the two kinetically significant intermediates in formation of an RNA polymerase-promoter open complex: evidence that interactions with start site and downstream DNA induce sequential conformational changes in polymerase and DNA.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M702232200

21 January 2018

Nonspecific interactions of Escherichia coli RNA polymerase with native and denatured DNA: differences in the binding behavior of core and holoenzyme

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M702232200

21 January 2018

HO. and DNase I probing of E sigma 70 RNA polymerase--lambda PR promoter open complexes: Mg2+ binding and its structural consequences at the transcription start site

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M702232200

21 January 2018

GalR represses galP1 by inhibiting the rate-determining open complex formation through RNA polymerase contact: a GalR negative control mutant

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M702232200

21 January 2018

Characterization of the closed complex intermediate formed during transcription initiation by Escherichia coli RNA polymerase

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M702232200

21 January 2018

Transcription activation parameters at ara pBAD.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M702232200

21 January 2018

Escherichia coli RNA polymerase contacts outside the -10 promoter element are not essential for promoter melting

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M702232200

21 January 2018

An RNA polymerase mutant deficient in DNA melting facilitates study of activation mechanism: application to an artificial activator of transcription.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M702232200

21 January 2018

Purification of highly-active and soluble Escherichia coli sigma 70 polypeptide overproduced at low temperature.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M702232200

21 January 2018

Aromatic amino acids in region 2.3 of Escherichia coli sigma 70 participate collectively in the formation of an RNA polymerase-promoter open complex

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M702232200

21 January 2018

Quantitative DNase footprint titration: a method for studying protein-DNA interactions

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M702232200

21 January 2018

Mechanistic differences in promoter DNA melting by Thermus aquaticus and Escherichia coli RNA polymerases

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M702232200

21 January 2018

Changes in the 17 bp spacer in the P(R) promoter of bacteriophage lambda affect steps in open complex formation that precede DNA strand separation

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M702232200

21 January 2018

Kinetics and mechanism of the interaction of Escherichia coli RNA polymerase with the λPR promoter

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M702232200

21 January 2018

Promoter recognition by Escherichia coli RNA polymerase: effects of base substitutions in the -10 and -35 regions

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M702232200

21 January 2018

Direct evidence for the preferential binding of Escherichia coli RNA polymerase holoenzyme to the ends of deoxyribonucleic acid restriction fragments

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M702232200

21 January 2018

Structural basis of transcription initiation: an RNA polymerase holoenzyme-DNA complex

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M702232200

21 January 2018

Escherichia coli promoter opening and -10 recognition: mutational analysis of sigma70.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M702232200

21 January 2018

DNA sequence elements located immediately upstream of the -10 hexamer in Escherichia coli promoters: a systematic study

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M702232200

21 January 2018

A basal promoter element recognized by free RNA polymerase sigma subunit determines promoter recognition by RNA polymerase holoenzyme.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M702232200

21 January 2018

rRNA promoter regulation by nonoptimal binding of sigma region 1.2: an additional recognition element for RNA polymerase.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M702232200

21 January 2018

Hierarchies of base pair preferences in the P22 ant promoter

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M702232200

21 January 2018

A mutant spacer sequence between -35 and -10 elements makes the Plac promoter hyperactive and cAMP receptor protein-independent

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M702232200

21 January 2018

Structure of open promoter complexes with Escherichia coli RNA polymerase as revealed by the DNase I footprinting technique: compilation analysis

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M702232200

21 January 2018

Nucleotide-dependent isomerization of Escherichia coli RNA polymerase

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M702232200

21 January 2018

Rate-limiting steps in RNA chain initiation

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M702232200

21 January 2018

Base-specific recognition of the nontemplate strand of promoter DNA by E. coli RNA polymerase

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M702232200

21 January 2018

Spacer mutations in the lac ps promoter

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M702232200

21 January 2018

Promoter recognition by Escherichia coli RNA polymerase. Role of the spacer DNA in functional complex formation.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M702232200

21 January 2018

Promoter recognition by Escherichia coli RNA polymerase. Effects of single base pair deletions and insertions in the spacer DNA separating the -10 and -35 regions are dependent on spacer DNA sequence.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M702232200

21 January 2018

Compilation of E. coli mRNA promoter sequences

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M702232200

21 January 2018

Interaction of RNA polymerase with forked DNA: evidence for two kinetically significant intermediates on the pathway to the final complex

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M702232200

21 January 2018

Identifiers

10.1074/JBC.M702232200

1 reference

Europe PubMed Central

3 November 2017

1 reference

Europe PubMed Central

3 November 2017

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