(Q42632009)

4 November 2017

A broadscale phylogenetic analysis of group II intron RNAs and intron-encoded reverse transcriptases (English)

1 reference

4 November 2017

1 reference

Dawn M Simon

1

1 reference

PubMed ID

19713327

4 November 2017

Scot A Kelchner

series ordinal

2

1 reference

PubMed ID

19713327

4 November 2017

Steven Zimmerly

series ordinal

3

1 reference

4 November 2017

27 August 2009

1 reference

Molecular Biology and Evolution

4 November 2017

1 reference

4 November 2017

26

1 reference

4 November 2017

12

1 reference

4 November 2017

2795-2808

1 reference

ProtTest: selection of best-fit models of protein evolution

4 November 2017

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

Parallel Metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

Retroelements containing introns in diverse invertebrate taxa

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

Group I introns are inherited through common ancestry in the nuclear-encoded rRNA of Zygnematales (Charophyceae)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

Noncoding plastid trnT-trnF sequences reveal a well resolved phylogeny of basal angiosperms

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

Homing endonuclease genes: the rise and fall and rise again of a selfish element

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

Bias in phylogenetic reconstruction of vertebrate rhodopsin sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

Complex spliceosomal organization ancestral to extant eukaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

Effects of nucleotide composition bias on the success of the parsimony criterion in phylogenetic inference

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

ORF-less and reverse-transcriptase-encoding group II introns in archaebacteria, with a pattern of homing into related group II intron ORFs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

Comparison of Bayesian and maximum likelihood bootstrap measures of phylogenetic reliability.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

A complex twintron is excised as four individual introns

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

Reliability of Bayesian Posterior Probabilities and Bootstrap Frequencies in Phylogenetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

The reverse-transcriptase-like proteins encoded by group II introns in the mitochondrial genome of the brown alga Pylaiella littoralis belong to two different lineages which apparently coevolved with the group II ribosyme lineages

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

Compositional bias may affect both DNA-based and protein-based phylogenetic reconstructions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

Likelihood-based tests of topologies in phylogenetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

Mobile DNA in Old World monkeys: a glimpse through the rhesus macaque genome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

The natural history of group I introns

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

The recent transfer of a homing endonuclease gene

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

Phylogenetic evidence for horizontal transmission of group I introns in the nuclear ribosomal DNA of mushroom-forming fungi

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

Conserved sequence motifs, alignment, and secondary structure for the third domain of animal 12S rRNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

Frequentist properties of Bayesian posterior probabilities of phylogenetic trees under simple and complex substitution models

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

MRBAYES: Bayesian inference of phylogenetic trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

Use of rRNA secondary structure in phylogenetic studies to identify homologous positions: an example of alignment and data presentation from the frogs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

Reconstructing evolutionary trees from DNA and protein sequences: paralinear distances

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

21 January 2018

Mobile group II introns

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

The importance of proper model assumption in bayesian phylogenetics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

Polytomies and Bayesian phylogenetic inference

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

The age and evolution of non-LTR retrotransposable elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

tRNomics: analysis of tRNA genes from 50 genomes of Eukarya, Archaea, and Bacteria reveals anticodon-sparing strategies and domain-specific features

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

Introns and the origin of nucleus-cytosol compartmentalization

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

Molecular evidence of HIV-1 transmission in a criminal case

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

The evolution of base composition and phylogenetic inference

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

Model selection and model averaging in phylogenetics: advantages of akaike information criterion and bayesian approaches over likelihood ratio tests

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

MODELTEST: testing the model of DNA substitution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

Retroids in archaea: phylogeny and lateral origins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

Origins and evolution of spliceosomal introns

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

MrBayes 3: Bayesian phylogenetic inference under mixed models

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

An approximately unbiased test of phylogenetic tree selection

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

CONSEL: for assessing the confidence of phylogenetic tree selection

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

Phylogeny and self-splicing ability of the plastid tRNA-Leu group I Intron.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

Divergent histories of rDNA group I introns in the lichen family Physciaceae.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

Group II introns in eubacteria and archaea: ORF-less introns and new varieties

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

Overcredibility of molecular phylogenies obtained by Bayesian phylogenetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

Shared nucleotide composition biases among species and their impact on phylogenetic reconstructions of the Drosophilidae

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

Sequence homology between retroviral reverse transcriptase and putative polymerases of hepatitis B virus and cauliflower mosaic virus

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

Coevolution of group II intron RNA structures with their intron-encoded reverse transcriptases

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

mRNA splicing and autocatalytic introns: distant cousins or the products of chemical determinism?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

RevTrans: Multiple alignment of coding DNA from aligned amino acid sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

A molecular timeline for the origin of photosynthetic eukaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

Phylogenetic relationships among group II intron ORFs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

rtREV: an amino acid substitution matrix for inference of retrovirus and reverse transcriptase phylogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP193

21 January 2018

Identifiers

DOI

10.1093/MOLBEV/MSP193

1 reference

4 November 2017

1 reference

PubMed ID

19713327