(Q42635605)

English

A trans-specific polymorphism in ZC3HAV1 is maintained by long-standing balancing selection and may confer susceptibility to multiple sclerosis.

scientific article published on 6 January 2012

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scholarly article

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22 January 2020

A trans-specific polymorphism in ZC3HAV1 is maintained by long-standing balancing selection and may confer susceptibility to multiple sclerosis (English)

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22 January 2020

multiple sclerosis

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Daniela Galimberti

6

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22 January 2020

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22 January 2020

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22 January 2020

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22 January 2020

Federico Marini

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22 January 2020

Rachele Cagliani

1

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22 January 2020

Matteo Fumagalli

3

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22 January 2020

Cristina Agliardi

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22 January 2020

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22 January 2020

Maristella Pitzalis

14

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22 January 2020

Magdalena Zołedziewska

15

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22 January 2020

Francesco Cucca

16

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22 January 2020

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22 January 2020

22

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22 January 2020

author name string

F R Guerini

2

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22 January 2020

S Riva

4

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22 January 2020

B Dubois

9

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22 January 2020

C Fenoglio

10

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22 January 2020

I Zara

13

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22 January 2020

publication date

6 January 2012

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22 January 2020

Molecular Biology and Evolution

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22 January 2020

29

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22 January 2020

6

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22 January 2020

1599-1613

1 reference

Europe PubMed Central

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22 January 2020

The zinc-finger antiviral protein recruits the RNA processing exosome to degrade the target mRNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Variants within the immunoregulatory CBLB gene are associated with multiple sclerosis

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

SNAP: predict effect of non-synonymous polymorphisms on function

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nucleotide sequences of chimpanzee MHC class I alleles: evidence for trans-species mode of evolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sampling theory for neutral alleles in a varying environment.

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The HKA test revisited: a maximum-likelihood-ratio test of the standard neutral model

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Microcephalin, a Gene Regulating Brain Size, Continues to Evolve Adaptively in Humans

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Natural selection on the olfactory receptor gene family in humans and chimpanzees

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural and functional basis for ADP-ribose and poly(ADP-ribose) binding by viral macro domains

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The HLA-DRB9 gene and the origin of HLA-DR haplotypes

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

On the number of segregating sites in genetical models without recombination

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

GOLD--graphical overview of linkage disequilibrium

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

From evolutionary genetics to human immunology: how selection shapes host defence genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Expression of the zinc-finger antiviral protein inhibits alphavirus replication

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mathematical model for studying genetic variation in terms of restriction endonucleases

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Accounting for decay of linkage disequilibrium in haplotype inference and missing-data imputation

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Median-joining networks for inferring intraspecific phylogenies

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Prediction of deleterious human alleles

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The histone variant mH2A1.1 interferes with transcription by down-regulating PARP-1 enzymatic activity

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Parasites represent a major selective force for interleukin genes and shape the genetic predisposition to autoimmune conditions

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

SIFT: Predicting amino acid changes that affect protein function

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A map of human genome variation from population-scale sequencing

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The zinc finger antiviral protein directly binds to specific viral mRNAs through the CCCH zinc finger motifs

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Positive selection and increased antiviral activity associated with the PARP-containing isoform of human zinc-finger antiviral protein

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Unrooted genealogical tree probabilities in the infinitely-many-sites model.

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Two-locus sampling distributions and their application

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A statistical evaluation of models for the initial settlement of the american continent emphasizes the importance of gene flow with Asia

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification, analysis, and prediction of protein ubiquitination sites

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Recent common ancestry of human Y chromosomes: evidence from DNA sequence data

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The structure of haplotype blocks in the human genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A New Statistical Method for Haplotype Reconstruction from Population Data

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Reconstructing human origins in the genomic era

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Haplotype structure and divergence at human and chimpanzee serotonin transporter and receptor genes: implications for behavioral disorder association analyses

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

HLA-A and B polymorphisms predate the divergence of humans and chimpanzees

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The allele frequency spectrum in genome-wide human variation data reveals signals of differential demographic history in three large world populations

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Estimate of the mutation rate per nucleotide in humans

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Environmental factors and multiple sclerosis.

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Different selective pressures shape the molecular evolution of color vision in chimpanzee and human populations

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The epidemiology of multiple sclerosis in Europe.

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Recommended diagnostic criteria for multiple sclerosis: Guidelines from the international panel on the diagnosis of multiple sclerosis

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Widespread balancing selection and pathogen-driven selection at blood group antigen genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Contrasting histories of G6PD molecular evolution and malarial resistance in humans and chimpanzees

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gene conversion and different population histories may explain the contrast between polymorphism and linkage disequilibrium levels

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A coalescent-based method for detecting and estimating recombination from gene sequences

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Immunology: hepatitis A virus link to atopic disease

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Distribution and intensity of constraint in mammalian genomic sequence

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Kin selection, social structure, gene flow, and the evolution of chimpanzees

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Calibrating a coalescent simulation of human genome sequence variation

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Libsequence: a C++ class library for evolutionary genetic analysis.

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Prediction of ubiquitination sites by using the composition of k-spaced amino acid pairs

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

OAS1: a multiple sclerosis susceptibility gene that influences disease severity.

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mapping disease genes: family-based association studies

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Haploview: analysis and visualization of LD and haplotype maps

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Rational inferences about departures from Hardy-Weinberg equilibrium

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Patterns of Human Genetic Diversity: Implications for Human Evolutionary History and Disease

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Amino acid difference formula to help explain protein evolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Automated inference of molecular mechanisms of disease from amino acid substitutions.

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Inhibition of retroviral RNA production by ZAP, a CCCH-type zinc finger protein

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The signature of long-standing balancing selection at the human defensin beta-1 promoter.

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Estimation of divergence times for major lineages of primate species

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Differential activities of cellular and viral macro domain proteins in binding of ADP-ribose metabolites

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Revisions to the 2001 McDonald diagnostic criteria

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A method and server for predicting damaging missense mutations

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification and characterization of interferon-induced proteins that inhibit alphavirus replication

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Neutral behavior of shared polymorphism

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Inhibition of filovirus replication by the zinc finger antiviral protein

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Functional annotations improve the predictive score of human disease-related mutations in proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Long-term balancing selection maintains trans-specific polymorphisms in the human TRIM5 gene

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Pathogen-Driven Selection and Worldwide HLA Class I Diversity

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of a new susceptibility variant for multiple sclerosis in OAS1 by population genetics analysis.

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The probability and chromosomal extent of trans-specific polymorphism

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Systems genetics analysis of gene-by-environment interactions in human cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

PLINK: a tool set for whole-genome association and population-based linkage analyses

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Coding single-nucleotide polymorphisms associated with complex vs. Mendelian disease: evolutionary evidence for differences in molecular effects.

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Placing confidence limits on the molecular age of the human-chimpanzee divergence

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Low nucleotide diversity in chimpanzees and bonobos

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Inference of population structure using multilocus genotype data

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The hygiene hypothesis: an evolutionary perspective

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Putative papain-related thiol proteases of positive-strand RNA viruses. Identification of rubi- and aphthovirus proteases and delineation of a novel conserved domain associated with proteases of rubi-, alpha- and coronaviruses

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Statistical method for testing the neutral mutation hypothesis by DNA polymorphism

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

GeCo++: a C++ library for genomic features computation and annotation in the presence of variants

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Balancing selection and its effects on sequences in nearby genome regions

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome-wide identification of susceptibility alleles for viral infections through a population genetics approach

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Interrogating multiple aspects of variation in a full resequencing data set to infer human population size changes

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The SARS-Unique Domain (SUD) of SARS Coronavirus Contains Two Macrodomains That Bind G-Quadruplexes

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Scan of human genome reveals no new Loci under ancient balancing selection

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Statistical tests of neutrality of mutations

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

High levels of Y-chromosome nucleotide diversity in the genus Pan.

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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