(Q42679501)

4 November 2017

Sequence and structure classification of kinases (English)

1 reference

4 November 2017

3

Nick V Grishin

1 reference

4 November 2017

Sara Cheek

1

1 reference

PubMed ID

12095261

4 November 2017

Hong Zhang

series ordinal

2

1 reference

PubMed ID

12095261

4 November 2017

language of work or name

English

0 references

publication date

1 July 2002

1 reference

Journal of Molecular Biology

4 November 2017

1 reference

4 November 2017

320

1 reference

4 November 2017

855-881

1 reference

4 November 2017

4

1 reference

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

4 November 2017

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Profile hidden Markov models

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

SCOP: a structural classification of proteins database for the investigation of sequences and structures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

CATH--a hierarchic classification of protein domain structures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

The Pfam protein families database.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Phosphatidylinositol phosphate kinase: a link between protein kinase and glutathione synthase folds

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Novel families of putative protein kinases in bacteria and archaea: evolution of the "eukaryotic" protein kinase superfamily

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

The "catalytic" triad of isocitrate dehydrogenase kinase/phosphatase from E. coli and its relationship with that found in eukaryotic protein kinases

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Structural analyses of nucleotide binding to an aminoglycoside phosphotransferase

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

The crystal structure of the Physarum polycephalum actin-fragmin kinase: an atypical protein kinase with a specialized substrate-binding domain

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Crystal structure of the atypical protein kinase domain of a TRP channel with phosphotransferase activity

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Identification of a new class of protein kinases represented by eukaryotic elongation factor-2 kinase

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Structure of Type IIβ Phosphatidylinositol Phosphate Kinase

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Structural classification of proteins: new superfamilies

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Isolation of 3-phosphohistidine from phosphorylated pyruvate, phosphate dikinase

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Pyruvate phosphate dikinase: sequence of the histidyl peptide, the pyrophosphoryl and phosphoryl carrier

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Swiveling-domain mechanism for enzymatic phosphotransfer between remote reaction sites

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Chemical and biological evolution of nucleotide-binding protein

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Biosynthesis of isoprenoids via mevalonate in Archaea: the lost pathway

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

The P-loop--a common motif in ATP- and GTP-binding proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

An iso-random Bi Bi mechanism for adenylate kinase.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Phosphoryl transfer by a concerted reaction mechanism in UMP/CMP-kinase

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Crystal structure of Escherichia coli phosphoenolpyruvate carboxykinase: a new structural family with the P-loop nucleoside triphosphate hydrolase fold

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

X-ray structure of HPr kinase: a bacterial protein kinase with a P-loop nucleotide-binding domain

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Mg(2+)-Mn2+ clusters in enzyme-catalyzed phosphoryl-transfer reactions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Crystal structures of substrates and products bound to the phosphoglycerate kinase active site reveal the catalytic mechanism

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Carbamate kinase: New structural machinery for making carbamoyl phosphate, the common precursor of pyrimidines and arginine

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

The 1.5 A resolution crystal structure of the carbamate kinase-like carbamoyl phosphate synthetase from the hyperthermophilic Archaeon pyrococcus furiosus, bound to ADP, confirms that this thermostable enzyme is a carbamate kinase, and provides [...]

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Crystal structure of the complex of phosphofructokinase from Escherichia coli with its reaction products

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Structural basis for the ADP-specificity of a novel glucokinase from a hyperthermophilic archaeon

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Structure of Escherichia coli ribokinase in complex with ribose and dinucleotide determined to 1.8 A resolution: insights into a new family of kinase structures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

ThrH, a homoserine kinase isozyme with in vivo phosphoserine phosphatase activity in Pseudomonas aeruginosa

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

BeF(3)(-) acts as a phosphate analog in proteins phosphorylated on aspartate: structure of a BeF(3)(-) complex with phosphoserine phosphatase

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Crystal structure of phosphoserine phosphatase from Methanococcus jannaschii, a hyperthermophile, at 1.8 A resolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Crystal structure of L-2-haloacid dehalogenase from Pseudomonas sp. YL. An alpha/beta hydrolase structure that is different from the alpha/beta hydrolase fold

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Mechanistic studies of phosphoserine phosphatase, an enzyme related to P-type ATPases

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

The crystal structure of bacillus cereus phosphonoacetaldehyde hydrolase: insight into catalysis of phosphorus bond cleavage and catalytic diversification within the HAD enzyme superfamily

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

The crystal structure of yeast thiamin pyrophosphokinase

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Three-dimensional structure of nucleoside diphosphate kinase

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Adenosine 5'-diphosphate binding and the active site of nucleoside diphosphate kinase

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Catalytic center assembly of HPPK as revealed by the crystal structure of a ternary complex at 1.25 A resolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

2.0 A X-ray structure of the ternary complex of 7,8-dihydro-6-hydroxymethylpterinpyrophosphokinase from Escherichia coli with ATP and a substrate analogue

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Structure of mitochondrial creatine kinase

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Transition state structure of arginine kinase: implications for catalysis of bimolecular reactions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Nucleotide binding by the histidine kinase CheA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

NMR structure of the histidine kinase domain of the E. coli osmosensor EnvZ

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Histidine kinases: diversity of domain organization

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

A tale of two components: a novel kinase and a regulatory switch

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Crystallization of acetate kinase from Methanosarcina thermophila and prediction of its fold

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Urkinase: Structure of Acetate Kinase, a Member of the ASKHA Superfamily of Phosphotransferases

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

An ATPase domain common to prokaryotic cell cycle proteins, sugar kinases, actin, and hsp70 heat shock proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Crystal structures of mutant monomeric hexokinase I reveal multiple ADP binding sites and conformational changes relevant to allosteric regulation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

The TIM-barrel fold: a versatile framework for efficient enzymes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

The relationship between protein structure and function: a comprehensive survey with application to the yeast genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Structure of rabbit muscle pyruvate kinase complexed with Mn2+, K+, and pyruvate

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Structure of the bis(Mg2+)-ATP-oxalate complex of the rabbit muscle pyruvate kinase at 2.1 A resolution: ATP binding over a barrel

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Convergent evolution of similar enzymatic function on different protein folds: the hexokinase, ribokinase, and galactokinase families of sugar kinases

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Structure and mechanism of homoserine kinase: prototype for the GHMP kinase superfamily

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Structure of the Methanococcus jannaschii mevalonate kinase, a member of the GHMP kinase superfamily

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Structural basis for the catalysis and substrate specificity of homoserine kinase

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

X-ray crystal structure of aminoimidazole ribonucleotide synthetase (PurM), from the Escherichia coli purine biosynthetic pathway at 2.5 A resolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Investigation of the ATP binding site of Escherichia coli aminoimidazole ribonucleotide synthetase using affinity labeling and site-directed mutagenesis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

JPred: a consensus secondary structure prediction server

7 January 2021

2 references

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

7 January 2021

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

inferred from DOI database lookup

7 January 2021

based on heuristic

Cloning and characterization of a eukaryotic pantothenate kinase gene (panK) from Aspergillus nidulans

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

How do kinases transfer phosphoryl groups?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Synergistic effects of substrate-induced conformational changes in phosphoglycerate kinase activation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Structure of rat BCKD kinase: Nucleotide-induced domain communication in a mitochondrial protein kinase

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Archaeal shikimate kinase, a new member of the GHMP-kinase family

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Analogous enzymes: independent inventions in enzyme evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

The three-dimensional structure of shikimate kinase

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

The structure of uridylate kinase with its substrates, showing the transition state geometry.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Biosynthesis of terpenoids: YchB protein of Escherichia coli phosphorylates the 2-hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Inhibitors of the nonmevalonate pathway of isoprenoid biosynthesis as antimalarial drugs

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

The non-mevalonate isoprenoid biosynthesis of plants as a test system for new herbicides and drugs against pathogenic bacteria and the malaria parasite

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Identification, evolution, and essentiality of the mevalonate pathway for isopentenyl diphosphate biosynthesis in gram-positive cocci

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

The COG database: a tool for genome-scale analysis of protein functions and evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

The COG database: new developments in phylogenetic classification of proteins from complete genomes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

T-Coffee: A novel method for fast and accurate multiple sequence alignment

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

pH influences fluoride coordination number of the AlFx phosphoryl transfer transition state analog

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Phosphofructokinase: structure and control

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

Characterization and molecular cloning of an adenosine kinase from Babesia canis rossi.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

AlF3 mimics the transition state of protein phosphorylation in the crystal structure of nucleoside diphosphate kinase and MgADP

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

inferred from DOI database lookup

7 January 2021

based on heuristic

The eukaryotic protein kinase superfamily: kinase (catalytic) domain structure and classification 1

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900538-7

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1016/S0022-2836(02)00538-7

1 reference

4 November 2017

1 reference

PubMed ID

12095261