(Q42680100)

English

Chloroplast RNA editing going extreme: more than 3400 events of C-to-U editing in the chloroplast transcriptome of the lycophyte Selaginella uncinata

scientific article published on 20 August 2014

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

4 November 2017

Chloroplast RNA editing going extreme: more than 3400 events of C-to-U editing in the chloroplast transcriptome of the lycophyte Selaginella uncinata (English)

1 reference

Europe PubMed Central

PMC publication ID

4 November 2017

0 references

Selaginella uncinata

object named as

Selaginella uncinata

1 reference

based on heuristic

inferred from title

author name string

Bastian Oldenkott

1

1 reference

Europe PubMed Central

PMC publication ID

4 November 2017

Kazuo Yamaguchi

2

1 reference

Europe PubMed Central

PMC publication ID

4 November 2017

Sumika Tsuji-Tsukinoki

3

1 reference

Europe PubMed Central

PMC publication ID

4 November 2017

Nils Knie

4

1 reference

Europe PubMed Central

PMC publication ID

4 November 2017

Volker Knoop

5

1 reference

Europe PubMed Central

PMC publication ID

4 November 2017

language of work or name

0 references

publication date

20 August 2014

1 reference

Europe PubMed Central

PMC publication ID

4 November 2017

1 reference

Europe PubMed Central

PMC publication ID

4 November 2017

20

1 reference

Europe PubMed Central

PMC publication ID

4 November 2017

10

1 reference

Europe PubMed Central

PMC publication ID

4 November 2017

1499-1506

1 reference

Europe PubMed Central

PMC publication ID

4 November 2017

Improved computational target site prediction for pentatricopeptide repeat RNA editing factors

1 reference

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Architecture of the PPR gene family in the moss Physcomitrella patens

1 reference

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Elucidation of the RNA recognition code for pentatricopeptide repeat proteins involved in organelle RNA editing in plants

1 reference

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PREPACT 2.0: Predicting C-to-U and U-to-C RNA Editing in Organelle Genome Sequences with Multiple References and Curated RNA Editing Annotation.

1 reference

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27 May 2018

RNA editing in mitochondrial trans-introns is required for splicing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174432

27 May 2018

A combinatorial amino acid code for RNA recognition by pentatricopeptide repeat proteins.

1 reference

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27 May 2018

Organellar RNA editing

1 reference

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Evolution of the deaminase fold and multiple origins of eukaryotic editing and mutagenic nucleic acid deaminases from bacterial toxin systems

1 reference

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27 May 2018

The Selaginella genome identifies genetic changes associated with the evolution of vascular plants

1 reference

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MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

1 reference

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Extreme RNA editing in coding islands and abundant microsatellites in repeat sequences of Selaginella moellendorffii mitochondria: the root of frequent plant mtDNA recombination in early tracheophytes

1 reference

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A unique transcriptome: 1782 positions of RNA editing alter 1406 codon identities in mitochondrial mRNAs of the lycophyte Isoetes engelmannii

1 reference

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Complete plastome sequences of Equisetum arvense and Isoetes flaccida: implications for phylogeny and plastid genome evolution of early land plant lineages

1 reference

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27 May 2018

When you can't trust the DNA: RNA editing changes transcript sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174432

27 May 2018

Intron RNA editing is essential for splicing in plant mitochondria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174432

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Introducing the plant RNA editing prediction and analysis computer tool PREPACT and an update on RNA editing site nomenclature

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174432

27 May 2018

Organellar RNA editing and plant-specific extensions of pentatricopeptide repeat proteins in jungermanniid but not in marchantiid liverworts

1 reference

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OrganellarGenomeDRAW (OGDRAW): a tool for the easy generation of high-quality custom graphical maps of plastid and mitochondrial genomes

1 reference

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27 May 2018

The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs

1 reference

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27 May 2018

The first complete chloroplast genome sequence of a lycophyte, Huperzia lucidula (Lycopodiaceae).

1 reference

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27 May 2018

A pentatricopeptide repeat protein is essential for RNA editing in chloroplasts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174432

27 May 2018

The mitochondrial DNA of land plants: peculiarities in phylogenetic perspective

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174432

27 May 2018

Variation in sequence and RNA editing within core domains of mitochondrial group II introns among plants

1 reference

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tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

1 reference

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RNA editing status of nad7 intron domains in wheat mitochondria

1 reference

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Intron loss from the NADH dehydrogenase subunit 4 gene of lettuce mitochondrial DNA: evidence for homologous recombination of a cDNA intermediate

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174432

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Two DYW subclass PPR proteins are involved in RNA editing of ccmFc and atp9 transcripts in the moss Physcomitrella patens: first complete set of PPR editing factors in plant mitochondria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174432

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A DYW-protein knockout in Physcomitrella affects two closely spaced mitochondrial editing sites and causes a severe developmental phenotype.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174432

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Loss of two introns from the Magnolia tripetala mitochondrial cox2 gene implicates horizontal gene transfer and gene conversion as a novel mechanism of intron loss

1 reference

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Nuclear DYW-type PPR gene families diversify with increasing RNA editing frequencies in liverwort and moss mitochondria

1 reference

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RNA editing restores critical domains of a group I intron in fern mitochondria

1 reference

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Unparalleled GC content in the plastid DNA of Selaginella

1 reference

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A DYW domain-containing pentatricopeptide repeat protein is required for RNA editing at multiple sites in mitochondria of Arabidopsis thaliana

1 reference

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Nuclear genome size in Selaginella

1 reference

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The chloroplast genome from a lycophyte (microphyllophyte), Selaginella uncinata, has a unique inversion, transpositions and many gene losses

1 reference

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RNA editing has been lost in the mitochondrial cox3 and rps13 mRNAs in Asparagales.

1 reference

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1 reference

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1 reference

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A hypothesis on the identification of the editing enzyme in plant organelles

1 reference

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1 reference

https://pubmed.ncbi.nlm.nih.gov/25142065

12 December 2020

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Fast evolution of the retroprocessed mitochondrial rps3 gene in Conifer II and further evidence for the phylogeny of gymnosperms

1 reference

https://pubmed.ncbi.nlm.nih.gov/25142065

12 December 2020

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The sugar beet mitochondrial nad4 gene: an intron loss and its phylogenetic implication in the Caryophyllales

1 reference

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inferred from PubMed ID database lookup

Differential RNA editing in closely related introns in Oenothera mitochondria

1 reference

https://pubmed.ncbi.nlm.nih.gov/25142065

12 December 2020

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Identifiers

10.1261/RNA.045575.114

1 reference

Europe PubMed Central

PMC publication ID

4 November 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

4 November 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

4 November 2017

ResearchGate publication ID

0 references

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