(Q42697270)

13 June 2018

title

Chromatin accessibility prediction via convolutional long short-term memory networks with k-mer embedding (English)

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13 June 2018

convolutional neural network

0 references

1 reference

long short-term memory

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based on heuristic

inferred from title

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5

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13 June 2018

author name string

Xu Min

1

1 reference

13 June 2018

Wanwen Zeng

2

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13 June 2018

Ning Chen

3

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13 June 2018

Ting Chen

4

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13 June 2018

language of work or name

English

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publication date

1 July 2017

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13 June 2018

published in

Bioinformatics

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13 June 2018

volume

33

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13 June 2018

issue

14

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13 June 2018

page(s)

i92-i101

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13 June 2018

Creative Commons Attribution-NonCommercial 4.0 International

copyright license

start time

12 July 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Modeling the causal regulatory network by integrating chromatin accessibility and transcriptome data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870572

Convolutional neural network architectures for predicting DNA-protein binding

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870572

Basset: learning the regulatory code of the accessible genome with deep convolutional neural networks

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870572

Predicting the sequence specificities of DNA- and RNA-binding proteins by deep learning

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870572

Discriminative prediction of mammalian enhancers from DNA sequence.

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870572

Chromatin accessibility pre-determines glucocorticoid receptor binding patterns.

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870572

Open conformation chromatin and pluripotency

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870572

Reducing the dimensionality of data with neural networks

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870572

Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS)

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870572

The ENCODE (ENCyclopedia Of DNA Elements) Project

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870572

14 June 2018

Long short-term memory

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870572

Predicting effects of noncoding variants with deep learning-based sequence model

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870572

Enhanced regulatory sequence prediction using gapped k-mer features

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870572

The general inefficiency of batch training for gradient descent learning

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870572

Spatial Pyramid Pooling in Deep Convolutional Networks for Visual Recognition.

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870572

Coupling transcription factor occupancy to nucleosome architecture with DNase-FLASH.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870572

Learning long-term dependencies with gradient descent is difficult.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870572

16 August 2018

Distributional Structure

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX234

The Vanishing Gradient Problem During Learning Recurrent Neural Nets and Problem Solutions

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX234

10.1093/BIOINFORMATICS/BTX234

21 January 2018

Identifiers

DOI

1 reference

13 June 2018

journals/bioinformatics/MinZCCJ17

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

13 June 2018

PubMed ID

28881969

1 reference

13 June 2018