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English
Predicting effects of noncoding variants with deep learning-based sequence model
scientific article published on 24 August 2015
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scholarly article
1 reference
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Q5412157
PMCID
4768299
retrieved
15 August 2017
title
Predicting effects of noncoding variants with deep learning-based sequence model
(English)
1 reference
stated in
Q5412157
PMCID
4768299
retrieved
15 August 2017
main subject
deep learning
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author
Olga Troyanskaya
series ordinal
2
object named as
Olga G Troyanskaya
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Q5412157
PMCID
4768299
retrieved
15 August 2017
author name string
Jian Zhou
series ordinal
1
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Q5412157
PMCID
4768299
retrieved
15 August 2017
language of work or name
English
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publication date
24 August 2015
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Q5412157
PMCID
4768299
retrieved
15 August 2017
published in
Nature Methods
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stated in
Q5412157
PMCID
4768299
retrieved
15 August 2017
volume
12
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Q5412157
PMCID
4768299
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15 August 2017
page(s)
931-934
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Q5412157
PMCID
4768299
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15 August 2017
issue
10
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Q5412157
PMCID
4768299
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15 August 2017
describes a project that uses
deep learning
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based on heuristic
inferred from title
exact match
https://scigraph.springernature.com/pub.10.1038/nmeth.3547
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cites work
A method to predict the impact of regulatory variants from DNA sequence
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4768299
retrieved
30 September 2017
Integrative analysis of 111 reference human epigenomes
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4768299
retrieved
30 September 2017
FunSeq2: a framework for prioritizing noncoding regulatory variants in cancer
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4768299
retrieved
30 September 2017
Predicting the human epigenome from DNA motifs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4768299
retrieved
30 September 2017
Transcription factor binding predicts histone modifications in human cell lines
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4768299
retrieved
30 September 2017
Absence of a simple code: how transcription factors read the genome
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4768299
retrieved
30 September 2017
Enhanced regulatory sequence prediction using gapped k-mer features
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4768299
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30 September 2017
GRASP: analysis of genotype-phenotype results from 1390 genome-wide association studies and corresponding open access database
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retrieved
30 September 2017
Functional annotation of noncoding sequence variants.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4768299
retrieved
30 September 2017
A general framework for estimating the relative pathogenicity of human genetic variants
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4768299
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30 September 2017
The NHGRI GWAS Catalog, a curated resource of SNP-trait associations
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4768299
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30 September 2017
The UCSC Genome Browser database: 2014 update
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4768299
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30 September 2017
Recessive mutations in a distal PTF1A enhancer cause isolated pancreatic agenesis.
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4768299
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30 September 2017
Identification of genetic variants that affect histone modifications in human cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4768299
retrieved
30 September 2017
The Human Gene Mutation Database: building a comprehensive mutation repository for clinical and molecular genetics, diagnostic testing and personalized genomic medicine
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4768299
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30 September 2017
An integrated map of genetic variation from 1,092 human genomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4768299
retrieved
30 September 2017
Breast cancer risk-associated SNPs modulate the affinity of chromatin for FOXA1 and alter gene expression
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4768299
retrieved
30 September 2017
Sequence and chromatin determinants of cell-type-specific transcription factor binding
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4768299
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30 September 2017
An expansive human regulatory lexicon encoded in transcription factor footprints
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4768299
retrieved
30 September 2017
An integrated encyclopedia of DNA elements in the human genome
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4768299
retrieved
30 September 2017
VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4768299
retrieved
30 September 2017
Identifying a high fraction of the human genome to be under selective constraint using GERP++.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4768299
retrieved
30 September 2017
Detection of nonneutral substitution rates on mammalian phylogenies
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4768299
retrieved
30 September 2017
A regulatory SNP causes a human genetic disease by creating a new transcriptional promoter
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4768299
retrieved
30 September 2017
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4768299
retrieved
30 September 2017
Distribution and intensity of constraint in mammalian genomic sequence
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4768299
retrieved
30 September 2017
Identifiers
DOI
10.1038/NMETH.3547
1 reference
stated in
Q5412157
PMCID
4768299
retrieved
15 August 2017
PMCID
4768299
1 reference
stated in
Q5412157
PMCID
4768299
retrieved
15 August 2017
PubMed ID
26301843
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stated in
Q5412157
PMCID
4768299
retrieved
15 August 2017
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