(Q42703139)

5 November 2017

"Hook"-calibration of GeneChip-microarrays: chip characteristics and expression measures (English)

1 reference

5 November 2017

Stephan Preibisch

3

0 references

author name string

Hans Binder

series ordinal

1

1 reference

5 November 2017

Knut Krohn

series ordinal

2

1 reference

5 November 2017

29 August 2008

1 reference

Algorithms for Molecular Biology

5 November 2017

1 reference

5 November 2017

3

1 reference

5 November 2017

11

1 reference

Creative Commons Attribution 2.0 Generic

5 November 2017

start time

29 August 2008

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

exact match

https://scigraph.springernature.com/pub.10.1186/1748-7188-3-11

0 references

cites work

Calibration of microarray gene-expression data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2543012

"Hook"-calibration of GeneChip-microarrays: theory and algorithm

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2543012

Understanding the physics of oligonucleotide microarrays: the Affymetrix spike-in data reanalysed

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2543012

Effect of RNA quality on transcript intensity levels in microarray analysis of human post-mortem brain tissues

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2543012

Experimental optimization of probe length to increase the sequence specificity of high-density oligonucleotide microarrays.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2543012

Improved precision and accuracy for microarrays using updated probe set definitions

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2543012

Rat toxicogenomic study reveals analytical consistency across microarray platforms

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2543012

A rapid genome-scale response of the transcriptional oscillator to perturbation reveals a period-doubling path to phenotypic change

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2543012

The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2543012

Identical probes on different high-density oligonucleotide microarrays can produce different measurements of gene expression

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2543012

Relationship between gene expression and observed intensities in DNA microarrays--a modeling study

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2543012

Analysis of Affymetrix GeneChip data using amplified RNA.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2543012

RNA integrity and the effect on the real-time qRT-PCR performance

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2543012

A proposed metric for assessing the measurement quality of individual microarrays

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2543012

Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2543012

Base pair interactions and hybridization isotherms of matched and mismatched oligonucleotide probes on microarrays

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2543012

Effects of RNA degradation on gene expression analysis of human postmortem tissues

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2543012

Specific and nonspecific hybridization of oligonucleotide probes on microarrays

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2543012

Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2543012

A gene atlas of the mouse and human protein-encoding transcriptomes

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2543012

Effect of agonal and postmortem factors on gene expression profile: quality control in microarray analyses of postmortem human brain

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2543012

Amplified RNA degradation in T7-amplification methods results in biased microarray hybridizations

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2543012

Solving the riddle of the bright mismatches: labeling and effective binding in oligonucleotide arrays

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2543012

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2543012

Reproducibility of gene expression across generations of Affymetrix microarrays

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2543012

Summaries of Affymetrix GeneChip probe level data

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2543012

A comparison of Affymetrix gene expression arrays

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2543012

Characterization of mismatch and high-signal intensity probes associated with Affymetrix genechips.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2543012

Feature-level exploration of a published Affymetrix GeneChip control dataset

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2543012

Impact of RNA degradation on gene expression profiles: assessment of different methods to reliably determine RNA quality.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2543012

Meta- and reanalysis of gene expression profiles of hot and cold thyroid nodules and papillary thyroid carcinoma for gene groups.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2543012

Chipping away at the chip bias: RNA degradation in microarray analysis

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2543012

DNA hybridization to mismatched templates: a chip study.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2543012

DNA, RNA and hybrid RNA-DNA oligomers of identical sequence: structural and dynamic differences.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2543012

Replacing cRNA targets with cDNA reduces microarray cross-hybridization

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2543012

Amplification protocols introduce systematic but reproducible errors into gene expression studies

1 December 2018

1 reference

12 December 2020

Thermodynamic parameters to predict stability of RNA/DNA hybrid duplexes

1 reference

12 December 2020

Temperature dependence of thermodynamic properties for DNA/DNA and RNA/DNA duplex formation

1 reference

12 December 2020

Performance comparison of one-color and two-color platforms within the MicroArray Quality Control (MAQC) project

1 reference

12 December 2020

Identifiers

DOI

10.1186/1748-7188-3-11

1 reference

journals/almob/BinderKP08

5 November 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1748-7188-3-11

1 reference

5 November 2017

PubMed publication ID

18759984

1 reference