(Q42721072)

5 November 2017

CORE: a phylogenetically-curated 16S rDNA database of the core oral microbiome (English)

1 reference

5 November 2017

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Clifford J Beall

2

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author name string

Ann L Griffen

1

1 reference

5 November 2017

Noah D Firestone

3

1 reference

5 November 2017

Erin L Gross

4

1 reference

5 November 2017

James M Difranco

5

1 reference

5 November 2017

Jori H Hardman

6

1 reference

5 November 2017

Bastienne Vriesendorp

7

1 reference

5 November 2017

Russell A Faust

8

1 reference

5 November 2017

Daniel A Janies

9

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5 November 2017

Eugene J Leys

10

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5 November 2017

language of work or name

English

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publication date

22 April 2011

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5 November 2017

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5 November 2017

6

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5 November 2017

4

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5 November 2017

e19051

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Creative Commons Attribution 4.0 International

5 November 2017

start time

22 April 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

The human oral microbiome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081323

The Human Oral Microbiome Database: a web accessible resource for investigating oral microbe taxonomic and genomic information

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081323

QIIME allows analysis of high-throughput community sequencing data

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081323

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081323

A rapid bootstrap algorithm for the RAxML Web servers

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081323

Species divergence and the measurement of microbial diversity

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081323

Bacteria of dental caries in primary and permanent teeth in children and young adults

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081323

Dendroscope: An interactive viewer for large phylogenetic trees

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081323

Clustal W and Clustal X version 2.0

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081323

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081323

A detailed analysis of 16S ribosomal RNA gene segments for the diagnosis of pathogenic bacteria

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081323

Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081323

Changes in periodontal health status are associated with bacterial community shifts as assessed by quantitative 16S cloning and sequencing

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081323

New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081323

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081323

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081323

At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081323

Defining the normal bacterial flora of the oral cavity

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081323

Identification of candidate periodontal pathogens and beneficial species by quantitative 16S clonal analysis

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081323

Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081323

The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081323

Culture-independent identification of periodontitis-associated Porphyromonas and Tannerella populations by targeted molecular analysis.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081323

Molecular analysis of the microflora associated with dental caries

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081323

Diversity of bacterial populations on the tongue dorsa of patients with halitosis and healthy patients

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081323

BLAT—The BLAST-Like Alignment Tool

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081323

Bacterial diversity in human subgingival plaque

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081323

ATV: display and manipulation of annotated phylogenetic trees

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081323

Molecular analysis of microflora associated with dentoalveolar abscesses

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081323

Basic local alignment search tool

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081323

Chimeric 16S rDNA sequences of diverse origin are accumulating in the public databases

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081323

An Empirical Test of Bootstrapping as a Method for Assessing Confidence in Phylogenetic Analysis

16 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0019051

A Mathematical Theory of Communication

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0019051

10.1371/JOURNAL.PONE.0019051

21 January 2018

Identifiers

DOI

1 reference

release_6ymxjk5qfrcd7beosju5oycuwq

5 November 2017

0 references

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/6ymxjk5qfrcd7beosju5oycuwq

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

5 November 2017

PubMed publication ID

21544197

1 reference