(Q42722504)

5 November 2017

The suboptimal structures find the optimal RNAs: homology search for bacterial non-coding RNAs using suboptimal RNA structures (English)

1 reference

5 November 2017

Josef Pánek

1

1 reference

5 November 2017

Libor Krásny

2

1 reference

5 November 2017

Jan Bobek

3

1 reference

5 November 2017

Edita Jezková

4

1 reference

5 November 2017

Jana Korelusová

5

1 reference

5 November 2017

Jirí Vohradsky

6

1 reference

5 November 2017

language of work or name

English

0 references

publication date

30 December 2010

1 reference

5 November 2017

Nucleic Acids Research

1 reference

5 November 2017

39

1 reference

5 November 2017

8

1 reference

5 November 2017

3418-3426

1 reference

Creative Commons Attribution-NonCommercial 2.5 Generic

5 November 2017

start time

7 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

De novo computational prediction of non-coding RNA genes in prokaryotic genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082871

Rfam: updates to the RNA families database

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082871

Biocomputational prediction of small non-coding RNAs in Streptomyces

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082871

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082871

How to find small non-coding RNAs in bacteria

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082871

DINAMelt web server for nucleic acid melting prediction

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082871

Riboswitches as versatile gene control elements

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082871

6S RNA is a widespread regulator of eubacterial RNA polymerase that resembles an open promoter

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082871

A highly conserved 6S RNA structure is required for regulation of transcription

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082871

A comprehensive comparison of comparative RNA structure prediction approaches

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082871

Rfam: an RNA family database

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082871

Guide to the draft human genome

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082871

6S RNA regulates E. coli RNA polymerase activity

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082871

Improved predictions of secondary structures for RNA

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082871

Basic local alignment search tool

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082871

RNA secondary structure analysis using the Vienna RNA package.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082871

Identification and characterization of novel small RNAs in the aspS-yrvM intergenic region of the Bacillus subtilis genome

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082871

Expression of a small RNA, BS203 RNA, from the yocI-yocJ intergenic region of Bacillus subtilis genome

16 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21193488

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The identity of the transcription +1 position is crucial for changes in gene expression in response to amino acid starvation in Bacillus subtilis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21193488

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKQ1186

1 reference

5 November 2017

1 reference

5 November 2017

PubMed publication ID

21193488

1 reference