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English
Grape RNA-Seq analysis pipeline environment.
scientific article published on 17 January 2013
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instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMCID
3582270
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23329413%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 February 2020
title
Grape RNA-Seq analysis pipeline environment
(English)
1 reference
stated in
Europe PubMed Central
PMCID
3582270
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23329413%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 February 2020
main subject
RNA sequencing
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RNA analysis
1 reference
based on heuristic
inferred from title
RNA-Seq
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based on heuristic
inferred from title
author
Angelika Merkel
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMCID
3582270
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23329413%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 February 2020
Roderic Guigó i Serra
series ordinal
4
object named as
Roderic Guigó
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stated in
Europe PubMed Central
PMCID
3582270
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23329413%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 February 2020
author name string
David G Knowles
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMCID
3582270
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23329413%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 February 2020
Maik Röder
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMCID
3582270
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23329413%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 February 2020
language of work or name
English
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publication date
17 January 2013
1 reference
stated in
Europe PubMed Central
PMCID
3582270
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23329413%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 February 2020
number of pages
8
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published in
Bioinformatics
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stated in
Europe PubMed Central
PMCID
3582270
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23329413%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 February 2020
volume
29
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Europe PubMed Central
PMCID
3582270
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23329413%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 February 2020
page(s)
614-621
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stated in
Europe PubMed Central
PMCID
3582270
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23329413%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 February 2020
issue
5
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stated in
Europe PubMed Central
PMCID
3582270
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23329413%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 February 2020
cites work
The GEM mapper: fast, accurate and versatile alignment by filtration
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582270
retrieved
27 May 2018
Whole-genome sequencing identifies recurrent mutations in chronic lymphocytic leukaemia
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582270
retrieved
27 May 2018
A user's guide to the encyclopedia of DNA elements (ENCODE)
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582270
retrieved
27 May 2018
A pipeline for RNA-seq data processing and quality assessment
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582270
retrieved
27 May 2018
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582270
retrieved
27 May 2018
Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582270
retrieved
27 May 2018
Transcriptome genetics using second generation sequencing in a Caucasian population
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582270
retrieved
27 May 2018
BFAST: an alignment tool for large scale genome resequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582270
retrieved
27 May 2018
RNA-MATE: a recursive mapping strategy for high-throughput RNA-sequencing data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582270
retrieved
27 May 2018
The Sequence Alignment/Map format and SAMtools
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582270
retrieved
27 May 2018
Fast and accurate short read alignment with Burrows-Wheeler transform
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582270
retrieved
27 May 2018
How to map billions of short reads onto genomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582270
retrieved
27 May 2018
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582270
retrieved
27 May 2018
Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582270
retrieved
27 May 2018
RNA-Seq: a revolutionary tool for transcriptomics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582270
retrieved
27 May 2018
Expression of 24,426 human alternative splicing events and predicted cis regulation in 48 tissues and cell lines
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582270
retrieved
27 May 2018
Alternative isoform regulation in human tissue transcriptomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582270
retrieved
27 May 2018
Next-generation sequencing: applications beyond genomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582270
retrieved
27 May 2018
A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582270
retrieved
27 May 2018
RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582270
retrieved
27 May 2018
Mapping and quantifying mammalian transcriptomes by RNA-Seq
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582270
retrieved
27 May 2018
The transcriptional landscape of the yeast genome defined by RNA sequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582270
retrieved
27 May 2018
Highly integrated single-base resolution maps of the epigenome in Arabidopsis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582270
retrieved
27 May 2018
The ENCODE (ENCyclopedia Of DNA Elements) Project
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582270
retrieved
27 May 2018
Bioconductor: open software development for computational biology and bioinformatics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582270
retrieved
27 May 2018
Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582270
retrieved
27 May 2018
Identifiers
DOI
10.1093/BIOINFORMATICS/BTT016
1 reference
stated in
Europe PubMed Central
PMCID
3582270
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23329413%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 February 2020
DBLP publication ID
journals/bioinformatics/KnowlesRMG13
1 reference
stated in
DBLP Dataset 2021-01-02
retrieved
28 January 2021
PMCID
3582270
1 reference
stated in
Europe PubMed Central
PMCID
3582270
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23329413%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 February 2020
PubMed ID
23329413
1 reference
stated in
Europe PubMed Central
PMCID
3582270
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23329413%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 February 2020
ResearchGate publication ID
234161751
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