(Q42773736)

7 November 2017

Molecular dynamics simulations using temperature-enhanced essential dynamics replica exchange (English)

1 reference

7 November 2017

Marcus B Kubitzki

1

1 reference

7 November 2017

Bert L de Groot

series ordinal

2

1 reference

7 November 2017

language of work or name

English

0 references

publication date

23 March 2007

1 reference

7 November 2017

1 reference

7 November 2017

92

1 reference

7 November 2017

12

1 reference

7 November 2017

4262-4270

1 reference

Modified replica exchange simulation methods for local structure refinement

7 November 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1877756

Replica exchange with solute tempering: a method for sampling biological systems in explicit water

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1877756

Multiplexed-replica exchange molecular dynamics method for protein folding simulation

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1877756

Generalized-ensemble algorithms for molecular simulations of biopolymers

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1877756

Investigating protein dynamics in collective coordinate space

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1877756

Multicanonical ensemble: A new approach to simulate first-order phase transitions

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1877756

An efficient method for sampling the essential subspace of proteins.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1877756

Essential dynamics of proteins

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1877756

An extended sampling of the configurational space of HPr from E. coli.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1877756

Collective variable description of native protein dynamics

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1877756

Toward an exhaustive sampling of the configurational spaces of the two forms of the peptide hormone guanylin.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1877756

A Novel Hamiltonian Replica Exchange MD Protocol to Enhance Protein Conformational Space Sampling

16 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17384062

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Improved Efficiency of Replica Exchange Simulations through Use of a Hybrid Explicit/Implicit Solvation Model

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17384062

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1529/BIOPHYSJ.106.103101

1 reference

7 November 2017

1 reference

7 November 2017

PubMed publication ID

17384062

1 reference