(Q42777328)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26293300%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

title

Defining the three cell lineages of the human blastocyst by single-cell RNA-seq (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26293300%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

0 references

1 reference

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26293300%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

Ignacio del Valle

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26293300%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

Sissy E Wamaitha

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26293300%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

Tim Xiaoming Hu

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26293300%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

Kay Elder

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26293300%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

Paul Robson

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26293300%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

author name string

Paul Blakeley

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26293300%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

Philip Snell

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26293300%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

Leila Christie

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26293300%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

Kathy K Niakan

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26293300%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

language of work or name

English

0 references

publication date

20 August 2015

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26293300%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

number of pages

15

1 reference

inferred from page(s)

published in

Development

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26293300%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

volume

142

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26293300%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

issue

18

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26293300%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

page(s)

3151-3165

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26293300%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 3.0 Unported

22 February 2020

copyright license

start time

18 May 2021

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

DESeq2

object named as

DESeq

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

DESeq2

0 references

Cytoscape

object named as

Cytoscape

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

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1 reference

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Mouse and human blastocyst-derived stem cells: vive les differences

27 May 2018

1 reference

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Transcriptome-wide variability in single embryonic development cells.

27 May 2018

1 reference

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Activin/Nodal signalling before implantation: setting the stage for embryo patterning

27 May 2018

1 reference

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Resetting transcription factor control circuitry toward ground-state pluripotency in human

27 May 2018

1 reference

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Systematic identification of culture conditions for induction and maintenance of naive human pluripotency

27 May 2018

1 reference

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Differences in gene expression between mouse and human for dynamically regulated genes in early embryo

27 May 2018

1 reference

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The ability of inner-cell-mass cells to self-renew as embryonic stem cells is acquired following epiblast specification

27 May 2018

1 reference

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Bayesian approach to single-cell differential expression analysis

27 May 2018

1 reference

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Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells

27 May 2018

1 reference

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Induction of a human pluripotent state with distinct regulatory circuitry that resembles preimplantation epiblast.

27 May 2018

1 reference

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Treatment of human embryos with the TGFβ inhibitor SB431542 increases epiblast proliferation and permits successful human embryonic stem cell derivation

27 May 2018

1 reference

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Accounting for technical noise in single-cell RNA-seq experiments.

27 May 2018

1 reference

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Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells

27 May 2018

1 reference

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Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing

27 May 2018

1 reference

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Inferring the kinetics of stochastic gene expression from single-cell RNA-sequencing data

27 May 2018

1 reference

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Anatomy of a blastocyst: cell behaviors driving cell fate choice and morphogenesis in the early mouse embryo

27 May 2018

1 reference

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Analysis of human embryos from zygote to blastocyst reveals distinct gene expression patterns relative to the mouse

27 May 2018

1 reference

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Pluripotency in the embryo and in culture

27 May 2018

1 reference

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Human pre-implantation embryo development

27 May 2018

1 reference

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The roles of FGF and MAP kinase signaling in the segregation of the epiblast and hypoblast cell lineages in bovine and human embryos

27 May 2018

1 reference

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UCP2 regulates energy metabolism and differentiation potential of human pluripotent stem cells.

27 May 2018

1 reference

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Human hypoblast formation is not dependent on FGF signalling.

27 May 2018

1 reference

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Differential expression in RNA-seq: a matter of depth

27 May 2018

1 reference

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RNA sequencing reveals two major classes of gene expression levels in metazoan cells

27 May 2018

1 reference

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Activin/Nodal signaling controls divergent transcriptional networks in human embryonic stem cells and in endoderm progenitors

27 May 2018

1 reference

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Origin and role of distal visceral endoderm, a group of cells that determines anterior-posterior polarity of the mouse embryo.

27 May 2018

1 reference

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Zebrafish mRNA sequencing deciphers novelties in transcriptome dynamics during maternal to zygotic transition

27 May 2018

1 reference

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Transcription factor AP-2α promotes EGF-dependent invasion of human trophoblast.

27 May 2018

1 reference

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Nodal cis-regulatory elements reveal epiblast and primitive endoderm heterogeneity in the peri-implantation mouse embryo.

27 May 2018

1 reference

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Differential expression analysis for sequence count data

27 May 2018

1 reference

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The role of FGF/Erk signaling in pluripotent cells

27 May 2018

1 reference

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Human embryonic stem cells with biological and epigenetic characteristics similar to those of mouse ESCs

27 May 2018

1 reference

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Resolution of cell fate decisions revealed by single-cell gene expression analysis from zygote to blastocyst

27 May 2018

1 reference

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The transcription factor TCFAP2C/AP-2gamma cooperates with CDX2 to maintain trophectoderm formation

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582176

Making the blastocyst: lessons from the mouse

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582176

Rewirable gene regulatory networks in the preimplantation embryonic development of three mammalian species

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582176

Transcriptome profiling of human pre-implantation development

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582176

The Hippo signaling pathway components Lats and Yap pattern Tead4 activity to distinguish mouse trophectoderm from inner cell mass

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582176

Optimal timing of inner cell mass isolation increases the efficiency of human embryonic stem cell derivation and allows generation of sibling cell lines

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582176

Exploring RNA transcription and turnover in vivo by using click chemistry

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582176

NANOG is a direct target of TGFbeta/activin-mediated SMAD signaling in human ESCs

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582176

Mapping and quantifying mammalian transcriptomes by RNA-Seq

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582176

The ground state of embryonic stem cell self-renewal

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582176

Derivation of pluripotent epiblast stem cells from mammalian embryos

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582176

New cell lines from mouse epiblast share defining features with human embryonic stem cells

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582176

Absence of Nodal signaling promotes precocious neural differentiation in the mouse embryo

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582176

GDF3, a BMP inhibitor, regulates cell fate in stem cells and early embryos

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582176

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582176

Activin/Nodal and FGF pathways cooperate to maintain pluripotency of human embryonic stem cells.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582176

Cdx2 is required for correct cell fate specification and differentiation of trophectoderm in the mouse blastocyst

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582176

Nodal inhibits differentiation of human embryonic stem cells along the neuroectodermal default pathway.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582176

Expression of nodal, lefty-a, and lefty-B in undifferentiated human embryonic stem cells requires activation of Smad2/3.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582176

Control of early anterior-posterior patterning in the mouse embryo by TGF-β signalling

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582176

Molecular signature of human embryonic stem cells and its comparison with the mouse

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582176

Transcription factor gene AP-2 gamma essential for early murine development

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582176

Nodal signalling in the epiblast patterns the early mouse embryo

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582176

Eomesodermin is required for mouse trophoblast development and mesoderm formation

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582176

Smad2 signaling in extraembryonic tissues determines anterior-posterior polarity of the early mouse embryo

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582176

Differential expression of multiple fork head related genes during gastrulation and axial pattern formation in the mouse embryo

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582176

The formation and maintenance of the definitive endoderm lineage in the mouse: involvement of HNF3/forkhead proteins

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582176

Postimplantation expression patterns indicate a role for the mouse forkhead/HNF-3 alpha, beta and gamma genes in determination of the definitive endoderm, chordamesoderm and neuroectoderm.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582176

HNF-3 beta is essential for node and notochord formation in mouse development

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582176

The transition from maternal to embryonic control in the 2-cell mouse embryo.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582176

Developmental differences in the expression of FGF receptors between human and mouse embryos

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582176

Derivation of novel human ground state naive pluripotent stem cells

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582176

Activin/Nodal signalling maintains pluripotency by controlling Nanog expression.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582176

Epigenetic restriction of embryonic cell lineage fate by methylation of Elf5.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582176

TGFbeta/activin/nodal signaling is necessary for the maintenance of pluripotency in human embryonic stem cells

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582176

The unique transcriptome through day 3 of human preimplantation development

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582176

Transcription factor AP-2gamma is essential in the extra-embryonic lineages for early postimplantation development.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582176

Activins are expressed in preimplantation mouse embryos and in ES and EC cells and are regulated on their differentiation.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582176

High-resolution autoradiographic localization of DNA-containing sites and RNA synthesis in developing nucleoli of human preimplantation embryos: a new concept of embryonic nucleologenesis.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4582176

Human gene expression first occurs between the four- and eight-cell stages of preimplantation development

16 August 2018

1 reference

12 December 2020

Localization and binding of transforming growth factor-beta isoforms in mouse preimplantation embryos and in delayed and activated blastocysts

1 reference

12 December 2020

Nodal specifies embryonic visceral endoderm and sustains pluripotent cells in the epiblast before overt axial patterning

1 reference

12 December 2020

nodal expression in the primitive endoderm is required for specification of the anterior axis during mouse gastrulation

1 reference

12 December 2020

Identifiers

DOI

10.1242/DEV.123547

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26293300%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26293300%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

PubMed publication ID

26293300

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26293300%20AND%20SRC:MED&resulttype=core&format=json