(Q42791026)

7 November 2017

Normalization of two-channel microarrays accounting for experimental design and intensity-dependent relationships (English)

1 reference

7 November 2017

John D Storey

2

0 references

author name string

Alan R Dabney

series ordinal

1

1 reference

7 November 2017

1 January 2007

1 reference

7 November 2017

1 reference

7 November 2017

8

1 reference

7 November 2017

3

1 reference

7 November 2017

R44

1 reference

The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements

7 November 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868928

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868928

Transformations for cDNA microarray data.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868928

A new approach to intensity-dependent normalization of two-channel microarrays

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868928

Adjusting batch effects in microarray expression data using empirical Bayes methods

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868928

Normalization approaches for removing systematic biases associated with mass spectrometry and label-free proteomics

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868928

Comparative genomic hybridization using oligonucleotide microarrays and total genomic DNA.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868928

Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868928

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868928

Statistical tests for differential expression in cDNA microarray experiments

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868928

Mass spectrometry-based proteomics

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868928

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868928

From patterns to pathways: gene expression data analysis comes of age.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868928

Within the fold: assessing differential expression measures and reproducibility in microarray assays.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868928

Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868928

Assessing gene significance from cDNA microarray expression data via mixed models

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868928

Model-based analysis of oligonucleotide arrays: model validation, design issues and standard error application

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868928

Issues in cDNA microarray analysis: quality filtering, channel normalization, models of variations and assessment of gene effects

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868928

Analysis of variance for gene expression microarray data

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868928

An evaluation of the performance of cDNA microarrays for detecting changes in global mRNA expression

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868928

A reanalysis of a published Affymetrix GeneChip control dataset

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868928

Characterizing dye bias in microarray experiments

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868928

Experimental design for gene expression microarrays

16 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17391524

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Performance comparison of one-color and two-color platforms within the MicroArray Quality Control (MAQC) project

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17391524

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/GB-2007-8-3-R44

1 reference

Dimensions Publication ID

7 November 2017

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/gb-2007-8-3-r44

1 reference

7 November 2017

PubMed publication ID

17391524

1 reference