(Q42822521)

8 November 2017

The C-terminal end of the Trypanosoma brucei editing deaminase plays a critical role in tRNA binding (English)

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8 November 2017

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5

F Nina Papavasiliou

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author name string

Frank L Ragone

1

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8 November 2017

Jessica L Spears

2

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8 November 2017

Jessica M Wohlgamuth-Benedum

3

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8 November 2017

Nathan Kreel

4

1 reference

8 November 2017

F Nina Papavasiliou

5

1 reference

8 November 2017

Juan D Alfonzo

6

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8 November 2017

language of work or name

English

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publication date

20 May 2011

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8 November 2017

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8 November 2017

17

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8 November 2017

7

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8 November 2017

1296-1306

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describes a project that uses

8 November 2017

ImageQuant

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3138566/fullTextXML

inferred from PubMed Central ID database lookup

cites work

Crystal structure of the APOBEC3G catalytic domain reveals potential oligomerization interfaces

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Crystal structure of the anti-viral APOBEC3G catalytic domain and functional implications

27 May 2018

1 reference

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RNABindR: a server for analyzing and predicting RNA-binding sites in proteins

27 May 2018

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An adenosine-to-inosine tRNA-editing enzyme that can perform C-to-U deamination of DNA.

27 May 2018

1 reference

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Structural basis for lysidine formation by ATP pyrophosphatase accompanied by a lysine-specific loop and a tRNA-recognition domain

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138566

The structure of a yeast RNA-editing deaminase provides insight into the fold and function of activation-induced deaminase and APOBEC-1

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138566

Broad antiretroviral defence by human APOBEC3G through lethal editing of nascent reverse transcripts

27 May 2018

1 reference

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AID mediates hypermutation by deaminating single stranded DNA.

27 May 2018

1 reference

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tadA, an essential tRNA-specific adenosine deaminase from Escherichia coli

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138566

AID mutates E. coli suggesting a DNA deamination mechanism for antibody diversification

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138566

RNA editing by base deamination: more enzymes, more targets, new mysteries

27 May 2018

1 reference

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Functions and mechanisms of RNA editing

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138566

A third member of the RNA-specific adenosine deaminase gene family, ADAR3, contains both single- and double-stranded RNA binding domains

27 May 2018

1 reference

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C to U editing of the anticodon of imported mitochondrial tRNA(Trp) allows decoding of the UGA stop codon in Leishmania tarentolae

27 May 2018

1 reference

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An adenosine deaminase that generates inosine at the wobble position of tRNAs

27 May 2018

1 reference

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Specific expression of activation-induced cytidine deaminase (AID), a novel member of the RNA-editing deaminase family in germinal center B cells

27 May 2018

1 reference

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Escherichia coli cytidine deaminase provides a molecular model for ApoB RNA editing and a mechanism for RNA substrate recognition

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138566

Enzymatic formation of modified nucleosides in tRNA: dependence on tRNA architecture.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138566

Editing of the mitochondrial small subunit rRNA in Physarum polycephalum.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138566

Cytidine deaminase. The 2.3 A crystal structure of an enzyme: transition-state analog complex

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138566

Substitutional and insertional RNA editing of the cytochrome c oxidase subunit 1 mRNA of Physarum polycephalum

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138566

Are there limits to enzyme-inhibitor binding discrimination? Inferences from the behavior of nucleoside deaminases

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138566

A novel form of tissue-specific RNA processing produces apolipoprotein-B48 in intestine

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138566

Major transcript of the frameshifted coxII gene from trypanosome mitochondria contains four nucleotides that are not encoded in the DNA.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138566

Characterization of cytochrome c oxidase III transcripts that are edited only in the 3' region

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138566

Kinetoplastid mitochondria contain functional tRNAs which are encoded in nuclear DNA and also contain small minicircle and maxicircle transcripts of unknown function

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138566

A double-stranded RNA unwinding activity introduces structural alterations by means of adenosine to inosine conversions in mammalian cells and Xenopus eggs

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138566

Mechanism, specificity and general properties of the yeast enzyme catalysing the formation of inosine 34 in the anticodon of transfer RNA.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138566

NMR assignments and the identification of the secondary structure of the anti-retroviral cytidine deaminase

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138566

Crystal structures of Salmonella typhimurium biodegradative threonine deaminase and its complex with CMP provide structural insights into ligand-induced oligomerization and enzyme activation.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138566

Crystal structure of Staphylococcus aureus tRNA adenosine deaminase TadA in complex with RNA.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138566

Crystal structure of a bifunctional deaminase and reductase from Bacillus subtilis involved in riboflavin biosynthesis

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138566

C to U editing stimulates A to I editing in the anticodon loop of a cytoplasmic threonyl tRNA in Trypanosoma brucei

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138566

Biochemical and structural studies of A-to-I editing by tRNA:A34 deaminases at the wobble position of transfer RNA.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138566

A novel nucleotide incorporation activity implicated in the editing of mitochondrial transfer RNAs in Acanthamoeba castellanii

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138566

The p27 catalytic subunit of the apolipoprotein B mRNA editing enzyme is a cytidine deaminase.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138566

An unwinding activity that covalently modifies its double-stranded RNA substrate

16 August 2018

1 reference

12 December 2020

Mobilities of modified ribonucleotides on two-dimensional cellulose thin-layer chromatography

1 reference

12 December 2020

RNA editing associated with the generation of two distinct conformations of the trypanosomatid Leptomonas collosoma 7SL RNA

1 reference

12 December 2020

Structural and kinetic characterization of Escherichia coli TadA, the wobble-specific tRNA deaminase

1 reference

12 December 2020

Identifiers

DOI

10.1261/RNA.2748211

1 reference

8 November 2017

1 reference

8 November 2017

PubMed publication ID

21602302

1 reference